RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 MAP2K3P46734 347 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 ZSWIM7Q19AV6 140 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 TCTN1Q2MV58 587 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 OTOP2Q7RTS6 562 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 HS6ST3Q8IZP7 471 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 APCDD1Q8J025 514 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 HCAR2Q8TDS4 363 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 HRASLS5Q96KN8 279 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 SLC22A12Q96S37 553 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 BEX1Q9HBH7 125 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 IL26Q9NPH9 171 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 TMCC3Q9ULS5 477 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 TRAV6A0A075B6T7 132 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 GSAPA4D1B5 854 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 SYNDIG1LA6NDD5 238 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 SDHBP21912 280 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 SPAM1P38567 509 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 RPIAP49247 311 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 RAB14P61106 215 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 IRF8Q02556 426 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 CHRNA6Q15825 494 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 DUOXA1Q1HG43 343 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 LEXMQ3ZCV2 418 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 TPGS1Q6ZTW0 290 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 LUZP2Q86TE4 346 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 CHCHD4Q8N4Q1 142 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 OR4A15Q8NGL6 344 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 WFDC5Q8TCV5 224 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 SIPA1Q96FS4 1042 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 CD244Q9BZW8 370 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 GALNT9Q9HCQ5 603 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 CTPS2Q9NRF8 586 aa9.25□□□□□ -0.93
VCAN-210ENST00000513960 A0A0X1KG70 313 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 NUPL2O15504 423 aaKnown RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 GADD45GO95257 159 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 SDC1P18827 310 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 HNF1BP35680 557 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ABATP80404 500 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 HKDC1Q2TB90 917 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ERICH5Q6P6B1 374 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.24□□□□□ -0.93
VCAN-210ENST00000513960 GALNT6Q8NCL4 622 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 RIPOR3Q96MK2 946 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 VN1R3Q9BXE9 311 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 GON7Q9BXV9 100 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 TMEM245Q9H330 911 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 TVP23BQ9NYZ1 205 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 STOML2Q9UJZ1 356 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ACSL6Q9UKU0 697 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 PPT2Q9UMR5 302 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 POFUT2Q9Y2G5 429 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 PRSS21Q9Y6M0 314 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 B4DXG7 233 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ACRV1P26436 265 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 GSTM5P46439 218 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ITGA1P56199 1179 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 MAB21L1Q13394 359 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 SPHARQ15513 63 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 GPR19Q15760 415 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 GPR33Q49SQ1 333 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 PAQR6Q6TCH4 344 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ABI3BPQ7Z7G0 1075 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 Q8N402 240 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 LRRC17Q8N6Y2 441 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 C11orf65Q8NCR3 313 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 SLAIN1Q8ND83 568 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 LKAAEAR1Q8TD35 194 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 MRPS31Q92665 395 aaKnown RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 HHIPL1Q96JK4 782 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ZNF558Q96NG5 402 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 DHRS9Q9BPW9 319 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 HTATIP2Q9BUP3 242 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 CLEC4MQ9H2X3 399 aaPredicted RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 ANKRA2Q9H9E1 313 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 TBC1D17Q9HA65 648 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 MRPL17Q9NRX2 175 aaKnown RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 ATP6V1HQ9UI12 483 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 MRPS7Q9Y2R9 242 aaKnown RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 OR51B4Q9Y5P0 310 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 A0A1B0GVC2 190 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 A6NIN4 97 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 C5orf58C9J3I9 102 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ANXA8P13928 327 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 BPIP17213 487 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 CLDN8P56748 225 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 IFI44LQ53G44 452 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 YIF1BQ5BJH7 314 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 FAM180BQ6P0A1 224 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 DEF8Q6ZN54 512 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 CCDC149Q6ZUS6 474 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 OR4K1Q8NGD4 311 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 ZNF431Q8TF32 576 aaPredicted RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 SDHCQ99643 169 aaPredicted RBP9.24□□□□□ -0.93
VCAN-210ENST00000513960 MED28Q9H204 178 aa9.24□□□□□ -0.93
VCAN-210ENST00000513960 PCDH17O14917 1159 aa9.23□□□□□ -0.93
VCAN-210ENST00000513960 TAPBPO15533 448 aa9.23□□□□□ -0.93
VCAN-210ENST00000513960 SOCS5O75159 536 aa9.23□□□□□ -0.93
VCAN-210ENST00000513960 ENTPD6O75354 484 aa9.23□□□□□ -0.93
VCAN-210ENST00000513960 UGT2B17O75795 530 aa9.23□□□□□ -0.93
VCAN-210ENST00000513960 LAMP1P11279 417 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms