RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SULT1E1P49888 294 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 JAG1P78504 1218 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 RBBP4Q09028 425 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 RFTN2Q52LD8 501 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF628Q5EBL2 1059 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 TCTE1Q5JU00 501 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PRAMEF13Q5VWM6 474 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HIST2H2AA3Q6FI13 130 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF613Q6PF04 617 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PMM1Q92871 262 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 KIAA1143Q96AT1 154 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 MASTLQ96GX5 879 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HIST1H2AHQ96KK5 128 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 C12orf42Q96LP6 360 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF599Q96NL3 588 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 DMRTA2Q96SC8 542 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HIST1H2AJQ99878 128 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PDGFCQ9NRA1 345 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 MYEF2Q9P2K5 600 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 SCP2D1Q9UJQ7 156 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 SAMD4AQ9UPU9 718 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 OR51F1A6NGY5 319 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 TUBAL3A6NHL2 446 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 GADD45GO95257 159 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ESR1P03372 595 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 MTHFD2P13995 350 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HTR6P50406 440 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 KCTD2Q14681 263 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 TAF1AQ15573 450 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 CD276Q5ZPR3 534 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PLAG1Q6DJT9 500 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PTCHD4Q6ZW05 846 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ACOT1Q86TX2 421 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PDZD9Q8IXQ8 264 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 TRMT2BQ96GJ1 504 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 MCOLN1Q9GZU1 580 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 CHMP1AQ9HD42 196 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 RGS18Q9NS28 235 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 RLIMQ9NVW2 624 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 BTNL2Q9UIR0 455 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 KCNK7Q9Y2U2 307 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 KLRG2A4D1S0 409 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 MPTX1A8MV57 137 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM72CH0Y354 149 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 PRRG1O14668 218 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 CSO75390 466 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 VTNP04004 478 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 HLA-DPA1P20036 260 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SLC6A1P30531 599 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 PTGFRP43088 359 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 CASP6P55212 293 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 HSD17B7P56937 341 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM72AQ5TYM5 149 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM72DQ6L9T8 149 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 B3GLCTQ6Y288 498 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 C12orf40Q86WS4 652 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM72BQ86X60 149 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 KRTCAP2Q8N6L1 136 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 AP3S1Q92572 193 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 OR52E6Q96RD3 313 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 TBL1YQ9BQ87 522 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 KATNB1Q9BVA0 655 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 NLNQ9BYT8 704 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ANKRD19PQ9H560 264 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 NRBP2Q9NSY0 501 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 UFSP2Q9NUQ7 469 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 MTMR11A4FU01 709 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 PAGE1O75459 146 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 IL1AP01583 271 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 HOXC6P09630 235 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SMIM6P0DI80 62 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SFTPCP11686 197 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 CD1DP15813 335 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 GPX4P36969 197 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SELENOPP49908 381 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 RPL38P63173 70 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 CRTC2Q53ET0 693 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 CRTC1Q6UUV9 634 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SHFQ7M4L6 423 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 OXR1Q8N573 874 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SLC5A8Q8N695 610 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF527Q8NB42 609 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 METTL6Q8TCB7 284 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ACER1Q8TDN7 264 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SCMH1Q96GD3 660 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ZDHHC12Q96GR4 267 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 TAAR1Q96RJ0 339 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 PRR14Q9BWN1 585 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 COA1Q9GZY4 146 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 TMEM184CQ9NVA4 438 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF225Q9UK10 706 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 SLC45A1Q9Y2W3 748 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ASB4Q9Y574 426 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 ARID2Q68CP9 1835 aa11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-213ENST00000511496 YDJCA8MPS7 323 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 DISC1C4P0D8 188 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 GPR31O00270 319 aa11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 PRKRAO75569 313 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-213ENST00000511496 B3GALT4O96024 378 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms