RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 UGT2B7P16662 529 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 CCR8P51685 355 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 GRIN2CQ14957 1233 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC51AQ86UW1 340 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 GLYATL2Q8WU03 294 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 THEM6Q8WUY1 208 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 KCNJ9Q92806 393 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ZBTB45Q96K62 511 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PKP4Q99569 1192 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 GPR22Q99680 433 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 STRA6Q9BX79 667 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PCTPQ9UKL6 214 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ERVW-1Q9UQF0 538 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 P2RX6O15547 441 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SEPT4O43236 478 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 POP4O95707 220 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PIGRP01833 764 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 INHAP05111 366 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 HK3P52790 923 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC8B1Q6J4K2 584 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PET117Q6UWS5 81 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 KCTD20Q7Z5Y7 419 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 RETREG3Q86VR2 466 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 NRROSQ86YC3 692 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 OR5H6Q8NGV6 325 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 CHTF18Q8WVB6 975 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 TRAPPC12Q8WVT3 735 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ELP4Q96EB1 424 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ZDHHC12Q96GR4 267 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC6A7Q99884 636 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 FTHL17Q9BXU8 183 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ASAH2Q9NR71 780 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PLCXD1Q9NUJ7 323 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 FAM118AQ9NWS6 357 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 DNAJC27Q9NZQ0 273 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ERVK-18Q9QC07 812 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC7A11Q9UPY5 501 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 DHDHQ9UQ10 334 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 LIPT1Q9Y234 373 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 CACNG2Q9Y698 323 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 IRF6O14896 467 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 S100A7P31151 101 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 SLC6A9P48067 706 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 HCAR3P49019 387 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 CXCR4P61073 352 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 RRAS2P62070 204 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 NPRL3Q12980 569 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 DPY19L4Q7Z388 723 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TRAM1L1Q8N609 369 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 C22orf15Q8WYQ4 148 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 C10orf90Q96M02 699 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 PIP5K1AQ99755 562 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 PRRT1Q99946 306 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ORAI3Q9BRQ5 295 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 EBPLQ9BY08 206 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TBL1XR1Q9BZK7 514 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 B3GNT2Q9NY97 397 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 GRHPRQ9UBQ7 328 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 EPHA6Q9UF33 1036 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TIMM8BQ9Y5J9 83 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 MEIOCA2RUB1 952 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ADH1CP00326 375 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ADAP00813 363 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 DLDP09622 509 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 NMBRP28336 390 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 PRKAR1BP31321 381 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 PRSS3P35030 304 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 MTNR1AP48039 350 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 BMXP51813 675 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 C1QTNF8P60827 252 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 CAMK2DQ13557 499 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 IRF4Q15306 451 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 C2orf76Q3KRA6 126 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 RNF212Q495C1 297 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 LIPKQ5VXJ0 399 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TANGO2Q6ICL3 276 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 FAM117BQ6P1L5 589 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ZNF783Q6ZMS7 281 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TREML1Q86YW5 311 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 OR8S1Q8NH09 359 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 NTAN1Q96AB6 310 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ACBD6Q9BR61 282 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 DOHHQ9BU89 302 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TTYH3Q9C0H2 523 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 Q9N2J8 555 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ENPP5Q9UJA9 477 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 TGFB1I1O43294 461 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 SCGB1D1O95968 90 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 HSD17B1P14061 328 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 ZNF136P52737 540 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 PROX2Q3B8N5 592 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 C4orf17Q53FE4 359 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 BCL2L15Q5TBC7 163 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 MLIPQ5VWP3 458 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 LCN8Q6JVE9 175 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 PGM2L1Q6PCE3 622 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 HIST2H3AQ71DI3 136 aa10.83□□□□□ -0.68
LIMCH1-208ENST00000508501 FIBCD1Q8N539 461 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms