RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 ZFHX4Q86UP3 3567 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 IGHV1-45A0A0A0MS14 117 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 A0A0G2JN53 185 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 B4GALT2O60909 372 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 CDC123O75794 336 aaPredicted RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 CEACAM4O75871 244 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 BPGMP07738 259 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 UROSP10746 265 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 NEFHP12036 1026 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 COX6A1P12074 109 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 H2AFXP16104 143 aaPredicted RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 ITGA3P26006 1051 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 ALDH3A1P30838 453 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 GSTM5P46439 218 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 NEK2P51955 445 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SLC18A1P54219 525 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SNRPNP63162 240 aaKnown RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SLC13A2Q13183 592 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SERTAD2Q14140 314 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 MYBPC3Q14896 1274 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 TERF2Q15554 542 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 LINC00303Q3SY05 128 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 LACTB2Q53H82 288 aaPredicted RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SPIN4Q56A73 249 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SGO1Q5FBB7 561 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 CPZQ66K79 652 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 JMJD6Q6NYC1 403 aaPredicted RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 RPS27LQ71UM5 84 aaKnown RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 CPEB2Q7Z5Q1 589 aaKnown RBP13.78□□□□□ -0.2
LIMS3-205ENST00000487150 UBE3DQ7Z6J8 389 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 KBTBD2Q8IY47 623 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 GALNT16Q8N428 558 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 EFCAB3Q8N7B9 438 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SLC39A7Q92504 469 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 PTCHD1Q96NR3 888 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 SLC25A18Q9H1K4 315 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 KCNK9Q9NPC2 374 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 PRTFDC1Q9NRG1 225 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 NKIRAS1Q9NYS0 192 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 VPS29Q9UBQ0 182 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 FAM208BQ5VWN6 2430 aa13.78□□□□□ -0.2
LIMS3-205ENST00000487150 A0A0A6YYD5 115 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 SERTM1A2A2V5 107 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 LOC400499M0QZD8 3231 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 SAP18O00422 153 aaKnown RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 DYRK3O43781 588 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 JRKO75564 520 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 B3GALT4O96024 378 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 PDYNP01213 254 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 SERPINA7P05543 415 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 NR2F6P10588 404 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 CPN2P22792 545 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 GRK2P25098 689 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 ETV4P43268 484 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 SERPINB4P48594 390 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 CCL11P51671 97 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 OR4D2P58180 307 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 TNFRSF17Q02223 184 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 EEF1A2Q05639 463 aaKnown RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 ACTN3Q08043 901 aaPredicted RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 SLAMF1Q13291 335 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 RUNX2Q13950 521 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 IMPG1Q17R60 797 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 PLAG1Q6DJT9 500 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 FAAH2Q6GMR7 532 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 ZNF793Q6ZN11 406 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 RNF165Q6ZSG1 346 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 ANKRD37Q7Z713 158 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 GPR180Q86V85 440 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 NUDCD3Q8IVD9 361 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 SCUBE1Q8IWY4 988 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 METTL4Q8N3J2 472 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 FAM47BQ8NA70 645 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 METTL2AQ96IZ6 378 aaKnown RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 CCT7Q99832 543 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 PELOQ9BRX2 385 aaKnown RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 GATA5Q9BWX5 397 aaPredicted RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 LHPPQ9H008 270 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 C12orf65Q9H3J6 166 aaKnown RBP13.77□□□□□ -0.21
LIMS3-205ENST00000487150 TMBIM4Q9HC24 238 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 ZNF160Q9HCG1 818 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 C5AR2Q9P296 337 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 TEKT2Q9UIF3 430 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 ZNF225Q9UK10 706 aa13.77□□□□□ -0.21
LIMS3-205ENST00000487150 MDC1Q14676 2089 aaKnown RBP13.76□□□□□ -0.21
LIMS3-205ENST00000487150 IGKV3D-11A0A0A0MRZ8 115 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 TMEM114B3SHH9 223 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 RTCAO00442 366 aaKnown RBP13.76□□□□□ -0.21
LIMS3-205ENST00000487150 CYR61O00622 381 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 PPP6CO00743 305 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 CTNSO60931 367 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 SH3BGRLO75368 114 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 SERPINE1P05121 402 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 UQCRHP07919 91 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 FAM58BPP0C7Q3 252 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 COX7A2P14406 83 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 BSGP35613 385 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 MAPK12P53778 367 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 FOXL2P58012 376 aa13.76□□□□□ -0.21
LIMS3-205ENST00000487150 ACSM2AQ08AH3 577 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms