RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 RPL6Q02878 288 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 EMX2Q04743 252 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 INSL4Q14641 139 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CRB2Q5IJ48 1285 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PRSS36Q5K4E3 855 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 LCN8Q6JVE9 175 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FAM171BQ6P995 826 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ARL9Q6T311 187 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 METAP1DQ6UB28 335 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FAM180AQ6UWF9 173 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TMPRSS11AQ6ZMR5 421 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FAM92BQ6ZTR7 304 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CADM3Q8N126 398 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 OR10H4Q8NGA5 316 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 OR2AP1Q8NGE2 309 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF671Q8TAW3 534 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF675Q8TD23 568 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PTCD2Q8WV60 388 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 NT5C3BQ969T7 300 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SH3YL1Q96HL8 342 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PPP1R2P1Q96PQ5 205 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 UHRF1Q96T88 793 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TTYH1Q9H313 450 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SLC32A1Q9H598 525 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CLN6Q9NWW5 311 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 RPS6KA6Q9UK32 745 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CA5BQ9Y2D0 317 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 DHRS7Q9Y394 339 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PCDHA9Q9Y5H5 950 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CCDC182A6NF36 153 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FABP12A6NFH5 140 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CHURC1-FNTBB4DL54 471 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 EEDO75530 441 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PRLP01236 227 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PTHP01270 115 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 IFNW1P05000 195 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TYRP14679 529 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 NSG1P42857 185 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 GPR4P46093 362 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 DAPP51397 102 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FBXW4P57775 412 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CDK6Q00534 326 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 NPRL3Q12980 569 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 KCNJ8Q15842 424 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 MOGQ16653 247 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 C11orf91Q3C1V1 193 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TBRG1Q3YBR2 411 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF404Q494X3 552 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ATAT1Q5SQI0 421 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CRTC1Q6UUV9 634 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF730Q6ZMV8 503 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 C16orf62Q7Z3J2 963 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SYT9Q86SS6 491 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SYT14Q8NB59 555 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 OR8H1Q8NGG4 311 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 KCNJ9Q92806 393 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 NEIL2Q969S2 332 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 EID2BQ96D98 161 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 RACGAP1Q9H0H5 632 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ZC4H2Q9NQZ6 224 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 MRPL39Q9NYK5 338 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 IL17CQ9P0M4 197 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 MKLN1Q9UL63 735 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 A0A1B0GVT2 93 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 K7ESM1 405 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 GFRA2O00451 464 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ACOX3O15254 700 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 UGT2B17O75795 530 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 RPP14O95059 124 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 IGHA2P01877 340 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 CCNYL3P0C7X3 344 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PIM1P11309 404 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 DRD5P21918 477 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ACVR1BP36896 505 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ACADVLP49748 655 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 MTAPQ13126 283 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SQSTM1Q13501 440 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SLC9A5Q14940 896 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 VMACQ2NL98 169 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 INAVAQ3KP66 663 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 GXYLT1Q4G148 440 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 GCNT6Q5T4J0 391 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ATAD3BQ5T9A4 648 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ELMSAN1Q6PJG2 1045 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FGD2Q7Z6J4 655 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TRIM69Q86WT6 500 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 OR51A7Q8NH64 312 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 SPPL3Q8TCT6 385 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TSPEARQ8WU66 669 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 RHBDF1Q96CC6 855 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ALPK1Q96QP1 1244 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TP63Q9H3D4 680 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 DSN1Q9H410 356 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PLSCR3Q9NRY6 295 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FAIMQ9NVQ4 179 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 NDOR1Q9UHB4 597 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF221Q9UK13 617 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 INTS6Q9UL03 887 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 HSPB11Q9Y547 144 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 STON1Q9Y6Q2 735 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms