RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C16orf47Q6ZP98 133 aaPredicted RBP13.16□□□□□ -0.3
UPF3A-204ENST00000475218 GALNTL5Q7Z4T8 443 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 CLNKQ7Z7G1 428 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 TBC1D1Q86TI0 1168 aaPredicted RBP13.16□□□□□ -0.3
UPF3A-204ENST00000475218 RELL1Q8IUW5 271 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 B3GNT7Q8NFL0 401 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 OR7G3Q8NG95 312 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 TSPAN10Q9H1Z9 355 aaPredicted RBP13.16□□□□□ -0.3
UPF3A-204ENST00000475218 PRTFDC1Q9NRG1 225 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 ACOT9Q9Y305 439 aa13.16□□□□□ -0.3
UPF3A-204ENST00000475218 CACNA1DQ01668 2161 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 APCP25054 2843 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 K7EPI3 171 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 ZNHIT1O43257 154 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 KLK8O60259 260 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 NME2P1O60361 137 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 URI1O94763 535 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 NME2P22392 152 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 MTTPP55157 894 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 OC90Q02509 493 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 CKAP4Q07065 602 aaKnown RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 SETDB1Q15047 1291 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 TERF2Q15554 542 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 TRIM40Q6P9F5 258 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 PLD6Q8N2A8 252 aaKnown RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 THAP3Q8WTV1 239 aaPredicted RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 MAPKAP1Q9BPZ7 522 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 SORBS1Q9BX66 1292 aaKnown RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 FUT8Q9BYC5 575 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 ACSS3Q9H6R3 686 aa13.15□□□□□ -0.3
UPF3A-204ENST00000475218 PNO1Q9NRX1 252 aaKnown RBP13.15□□□□□ -0.3
UPF3A-204ENST00000475218 TRBV11-1A0A0K0K1C0 115 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 SH3BGRLO75368 114 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 SLC25A12O75746 678 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 SCELO95171 688 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 ATP5A1P25705 553 aaKnown RBP13.15□□□□□ -0.31
UPF3A-204ENST00000475218 HLCSP50747 726 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 LAPTM5Q13571 262 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 NAA30Q147X3 362 aaPredicted RBP13.15□□□□□ -0.31
UPF3A-204ENST00000475218 SLC25A25Q6KCM7 469 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF595Q8IYB9 648 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 MMGT1Q8N4V1 131 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF321PQ8N8H1 164 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 RHEBL1Q8TAI7 183 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 PTPMT1Q8WUK0 201 aaPredicted RBP13.15□□□□□ -0.31
UPF3A-204ENST00000475218 NCLNQ969V3 563 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 GPR137Q96N19 417 aa13.15□□□□□ -0.31
UPF3A-204ENST00000475218 A0A087X1B8 175 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 A0A096LPK6 155 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 A0A1B0GUH1 482 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 SAP18O00422 153 aaKnown RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 TGFB1P01137 390 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 S100BP04271 92 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 CD46P15529 392 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 HIST1H1TP22492 207 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 EEF1DP29692 281 aaKnown RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 CA7P43166 264 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 MAGEA12P43365 314 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 SLC13A2Q13183 592 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 WHAMMP3Q1A5X7 153 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 PAGE2BQ5JRK9 111 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 GRHL2Q6ISB3 625 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 MED27Q6P2C8 311 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 FGD2Q7Z6J4 655 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 CPSF7Q8N684 471 aaKnown RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 TEX9Q8N6V9 391 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ACOT4Q8N9L9 421 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ARMC2Q8NEN0 867 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ITLN2Q8WWU7 325 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ISL2Q96A47 359 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ANKRD9Q96BM1 317 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 KCNC2Q96PR1 638 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF717Q9BY31 904 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 DEFB126Q9BYW3 111 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 OR51B5Q9H339 312 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 CDC42EP4Q9H3Q1 356 aaKnown RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 LIN28AQ9H9Z2 209 aaKnown RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 LYRM4Q9HD34 91 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF358Q9NW07 568 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 OPTCQ9UBM4 332 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 ZNF835Q9Y2P0 537 aa13.14□□□□□ -0.31
UPF3A-204ENST00000475218 NCOA6Q14686 2063 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-204ENST00000475218 CDK2AP1O14519 115 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 CTNSO60931 367 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 KLHL2O95198 593 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 MYBL2P10244 700 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 MAPKAPK3Q16644 382 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 PFKFB4Q16877 469 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 TECRLQ5HYJ1 363 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 MDGA2Q7Z553 956 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 TMEM178AQ8NBL3 297 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 HUS1BQ8NHY5 278 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 ADAMTS18Q8TE60 1221 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 SLC44A1Q8WWI5 657 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 VMP1Q96GC9 406 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 CCDC120Q96HB5 630 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 TBCDQ9BTW9 1192 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 ADAP2Q9NPF8 381 aa13.13□□□□□ -0.31
UPF3A-204ENST00000475218 A0A088AWK7 358 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms