RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PNO1Q9NRX1 252 aaKnown RBP17.32■□□□□ 0.36
COL7A1-209ENST00000474432 NINJ2Q9NZG7 142 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF835Q9Y2P0 537 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 ACOT9Q9Y305 439 aa17.32■□□□□ 0.36
COL7A1-209ENST00000474432 TRBV11-1A0A0K0K1C0 115 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 SUPT3HB4E1H0 165 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 K7EPI3 171 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 RTCAO00442 366 aaKnown RBP17.31■□□□□ 0.36
COL7A1-209ENST00000474432 CTNSO60931 367 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 SUPT3HO75486 399 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 SLC25A12O75746 678 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 SCELO95171 688 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 ATP5A1P25705 553 aaKnown RBP17.31■□□□□ 0.36
COL7A1-209ENST00000474432 MSH2P43246 934 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 PAGE2BQ5JRK9 111 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 MROH9Q5TGP6 573 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 C8orf74Q6P047 294 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 CLNKQ7Z7G1 428 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 RNF175Q8N4F7 328 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 OR7G3Q8NG95 312 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 RHEBL1Q8TAI7 183 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 ADAMTS18Q8TE60 1221 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 ITLN2Q8WWU7 325 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-209ENST00000474432 MRRFQ96E11 262 aaKnown RBP17.31■□□□□ 0.36
COL7A1-209ENST00000474432 MAPKAP1Q9BPZ7 522 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 SNX15Q9NRS6 342 aa17.31■□□□□ 0.36
COL7A1-209ENST00000474432 DMGDHQ9UI17 866 aaKnown RBP17.31■□□□□ 0.36
COL7A1-209ENST00000474432 A0A088AWK7 358 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 TRGV8A0A0C4DH27 118 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 MYOCOSA0A1B0GUC4 107 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 LRRC14BA6NHZ5 514 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 CLDN4O14493 209 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 ZNHIT1O43257 154 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 KLK8O60259 260 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 SLC19A2O60779 497 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 ALDOAP04075 364 aaKnown RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 S100BP04271 92 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF10P21506 573 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 CYB561P49447 251 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 CLCN2P51788 898 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 CKAP4Q07065 602 aaKnown RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 SLC13A2Q13183 592 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 NAA30Q147X3 362 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 MAPKAPK3Q16644 382 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 C16orf47Q6ZP98 133 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 RELL1Q8IUW5 271 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 HORMAD2Q8N7B1 307 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 ACOT4Q8N9L9 421 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 PTPMT1Q8WUK0 201 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-209ENST00000474432 NCLNQ969V3 563 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 VMP1Q96GC9 406 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 CCDC120Q96HB5 630 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 TBCDQ9BTW9 1192 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 FUT8Q9BYC5 575 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 LYRM4Q9HD34 91 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 ADAP2Q9NPF8 381 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 OPTCQ9UBM4 332 aa17.3■□□□□ 0.36
COL7A1-209ENST00000474432 A0A087X1B8 175 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 NPIPA5E9PKD4 350 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 SH3BGRLO75368 114 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 TGFB1P01137 390 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 HPDP32754 393 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 ALDH6A1Q02252 535 aaKnown RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 SETDB1Q15047 1291 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 C3AR1Q16581 482 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 HIST2H2ACQ16777 129 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 KRTCAP3Q53RY4 240 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 HIST2H2AA3Q6FI13 130 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 GRHL2Q6ISB3 625 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 MED27Q6P2C8 311 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 Q6ZPB1 254 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 MDGA2Q7Z553 956 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 FGD2Q7Z6J4 655 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 PLD6Q8N2A8 252 aaKnown RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 CPSF7Q8N684 471 aaKnown RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 ZNF321PQ8N8H1 164 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 NOA1Q8NC60 698 aaKnown RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 ANKRD9Q96BM1 317 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 C16orf45Q96MC5 204 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 KCNC2Q96PR1 638 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 SORBS1Q9BX66 1292 aaKnown RBP17.29■□□□□ 0.36
COL7A1-209ENST00000474432 ACSS3Q9H6R3 686 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 VTI1BQ9UEU0 232 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 NPIPA1Q9UND3 350 aa17.29■□□□□ 0.36
COL7A1-209ENST00000474432 EML6Q6ZMW3 1958 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 A0A096LPK6 155 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 CCL21O00585 134 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 ASNA1O43681 348 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 ITGA10O75578 1167 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 KLHL2O95198 593 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 HIST1H1TP22492 207 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-209ENST00000474432 ECHS1P30084 290 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 ELAVL1Q15717 326 aaKnown RBP17.28■□□□□ 0.36
COL7A1-209ENST00000474432 TMEM35AQ53FP2 167 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 DEPDC1Q5TB30 811 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 KHDRBS2Q5VWX1 349 aaKnown RBP17.28■□□□□ 0.36
COL7A1-209ENST00000474432 MMGT1Q8N4V1 131 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 TEX9Q8N6V9 391 aa17.28■□□□□ 0.36
COL7A1-209ENST00000474432 ALOXE3Q9BYJ1 711 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms