RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SPATA18	Q8TC71	538 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	HAS2	Q92819	552 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	FAM46B	Q96A09	425 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	PRICKLE1	Q96MT3	831 aa	Predicted RBP	3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	S1PR3	Q99500	378 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	LGMN	Q99538	433 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	UBAC1	Q9BSL1	405 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	UPF3A	Q9H1J1	476 aa	Known RBP	3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF665	Q9H7R5	613 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	S100A14	Q9HCY8	104 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	PRMT8	Q9NR22	394 aa	Predicted RBP	3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	NLGN3	Q9NZ94	848 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	HMG20B	Q9P0W2	317 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF319	Q9P2F9	582 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	THEG	Q9P2T0	379 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	TEKT2	Q9UIF3	430 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	APPL1	Q9UKG1	709 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	PLCL2	Q9UPR0	1127 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	PRSS21	Q9Y6M0	314 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	RNF215	Q9Y6U7	377 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	FGD5	Q6ZNL6	1462 aa		3.2	□□□□□ -1.9
PTCD3-209	ENST00000472044	SNED1	Q8TER0	1413 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRIM64	A6NGJ6	449 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRIM64B	A6NI03	449 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ANHX	E9PGG2	379 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	CHUK	O15111	745 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	INPP4B	O15327	924 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	IDH3B	O43837	385 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	PRDM1	O75626	825 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	GAS8	O95995	478 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	GSTA2	P09210	222 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	SELE	P16581	610 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	PKLR	P30613	574 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	TNFSF10	P50591	281 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	CRYBA2	P53672	197 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ABCE1	P61221	599 aa	Known RBP	3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	RIG	Q13278	110 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	GIT2	Q14161	759 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	STX1A	Q16623	288 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	UPP1	Q16831	310 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	C14orf177	Q52M58	125 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	C2CD6	Q53TS8	623 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	LYPLAL1	Q5VWZ2	237 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	B3GLCT	Q6Y288	498 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	TMEM64	Q6YI46	380 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF497	Q6ZNH5	498 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF410	Q86VK4	478 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	C17orf64	Q86WR6	236 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	CACUL1	Q86Y37	369 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	OR4N5	Q8IXE1	308 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	FBXW8	Q8N3Y1	598 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	RTL3	Q8N8U3	475 aa	Known RBP	3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ST7L	Q8TDW4	575 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ATP6V0A1	Q93050	837 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ATXN7L3B	Q96GX2	97 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF599	Q96NL3	588 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	PRAM1	Q96QH2	718 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	GAL3ST4	Q96RP7	486 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	TRIM51	Q9BSJ1	452 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	NTMT1	Q9BV86	223 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	ACAT2	Q9BWD1	397 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	TMEM245	Q9H330	911 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	C3orf14	Q9HBI5	128 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	PLEK2	Q9NYT0	353 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	EXOC6B	Q9Y2D4	811 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	DHX29	Q7Z478	1369 aa	Known RBP	3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	PCNX3	Q9H6A9	2034 aa		3.19	□□□□□ -1.9
PTCD3-209	ENST00000472044	IGHV4-30-2	A0A087WSY4	118 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044		A8MU76	341 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	EPM2A	B3EWF7	344 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	PSMD3	O43242	534 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	CSDE1	O75534	798 aa	Known RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	STBD1	O95210	358 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	HMOX1	P09601	288 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	NUDT17	P0C025	328 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	ZNF883	P0CG24	379 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	CT45A8	P0DMV1	189 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	CT45A9	P0DMV2	189 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	AOC1	P19801	751 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	GLRA1	P23415	457 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	FCAR	P24071	287 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	FCGR2B	P31994	310 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	FCGR2C	P31995	323 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	FHIT	P49789	147 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	ELAVL2	Q12926	359 aa	Known RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	PPP2R5C	Q13362	524 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	MSLN	Q13421	630 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	TSTA3	Q13630	321 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	KIAA0141	Q14154	515 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	GCKR	Q14397	625 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	GK2	Q14410	553 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	OR1C1	Q15619	314 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	MLF2	Q15773	248 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	RFTN2	Q52LD8	501 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	TAF1B	Q53T94	588 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	CT45A2	Q5DJT8	189 aa		3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	CAPN13	Q6MZZ7	669 aa	Predicted RBP	3.18	□□□□□ -1.9
PTCD3-209	ENST00000472044	ALKBH5	Q6P6C2	394 aa	Known RBP	3.18	□□□□□ -1.9

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