RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PNMA8BQ9ULN7 279 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PCDHGA2Q9Y5H1 932 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ATG2BQ96BY7 2078 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 C2orf16Q68DN1 1984 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 MYO10Q9HD67 2058 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 H7BY64 318 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 M0R129 80 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 M0R3G1 203 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 SLC22A1O15245 554 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 KRT75O95678 551 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 RECKO95980 971 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ARAFP10398 606 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 GGT2P36268 569 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ALDH9A1P49189 494 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 MAPK12P53778 367 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 DSTNP60981 165 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 CDK3Q00526 305 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ITGADQ13349 1161 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ATP1A4Q13733 1029 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 EIF4HQ15056 248 aaKnown RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 WSCD2Q2TBF2 565 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 RPS26P11Q5JNZ5 115 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PIP5KL1Q5T9C9 394 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 DEPDC1Q5TB30 811 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 KHDRBS2Q5VWX1 349 aaKnown RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 IGFN1Q86VF2 1251 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 TMCO5AQ8N6Q1 288 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 OR5K2Q8NHB8 316 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 IPCEF1Q8WWN9 437 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 FGF13Q92913 245 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 SMARCD2Q92925 531 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 TM4SF18Q96CE8 201 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PRAP1Q96NZ9 151 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 COPS4Q9BT78 406 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 EPS8L2Q9H6S3 715 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 PRDM8Q9NQV8 689 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 THSD1Q9NS62 852 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 ACER3Q9NUN7 267 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 SLC6A14Q9UN76 642 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 DENND4AQ7Z401 1863 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 KIF26AQ9ULI4 1882 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-217ENST00000466159 TRANK1O15050 2925 aa8.53□□□□□ -1.04
SYNE1-217ENST00000466159 TRBC2A0A5B9 178 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 OR2A25A4D2G3 310 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 ANXA8P13928 327 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 DDCP20711 480 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 UQCRC2P22695 453 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 BSGP35613 385 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 SLC19A1P41440 591 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 WASP42768 502 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 XCR1P46094 333 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 NUDT6P53370 316 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 ELOAQ14241 798 aaKnown RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 SYT16Q17RD7 645 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 TMEM236Q5W0B7 351 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 METRNLQ641Q3 311 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 TNFAIP8L2Q6P589 184 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 CEACAM20Q6UY09 585 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 ADAMTSL4Q6UY14 1074 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 DCDC5Q6ZRR9 648 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 IKBIPQ70UQ0 350 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 LRRTM4Q86VH4 590 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 PLD3Q8IV08 490 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 SLC44A2Q8IWA5 706 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 CENPSQ8N2Z9 138 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 HORMAD2Q8N7B1 307 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 RHOXF1Q8NHV9 184 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 UTP15Q8TED0 518 aaKnown RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 GEMIN6Q8WXD5 167 aaKnown RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 UCN3Q969E3 161 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 GTPBP3Q969Y2 492 aaKnown RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 PIP5K1AQ99755 562 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 MENTQ9BUN1 341 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 RSPO3Q9BXY4 272 aaPredicted RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 MS4A8Q9BY19 250 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 NLNQ9BYT8 704 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 NECTIN3Q9NQS3 549 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 CHCHD3Q9NX63 227 aaKnown RBP8.52□□□□□ -1.04
SYNE1-217ENST00000466159 ZNF226Q9NYT6 803 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 AHSPQ9NZD4 102 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 PRKAG2Q9UGJ0 569 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 PSORS1C1Q9UIG5 152 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 ICKQ9UPZ9 632 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 TSC22D4Q9Y3Q8 395 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 OR1A2Q9Y585 309 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 PMF1-BGLAPU3KQ54 211 aa8.52□□□□□ -1.04
SYNE1-217ENST00000466159 GRXCR1A8MXD5 290 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 C1QTNF3-AMACRE9PGA6 284 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 C5orf67F2Z3F1 127 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 LATO43561 262 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 PCDH8O95206 1070 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 NADKO95544 446 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-217ENST00000466159 ERGP11308 486 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 CD36P16671 472 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF12P17014 697 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 ITGA2P17301 1181 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 DRD3P35462 400 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 TGFBR2P37173 567 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 OPRD1P41143 372 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms