RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 WWP2O00308 870 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 DYRK3O43781 588 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 BANF1O75531 89 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 ZWINTO95229 277 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 P04436 131 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 ACVR2AP27037 513 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 GDF5P43026 501 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 GPR143P51810 404 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 MTTPP55157 894 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 ARL4CP56559 192 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 MYBPHQ13203 477 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 BIKQ13323 160 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 LAPTM5Q13571 262 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 FRG1Q14331 258 aaKnown RBP12.35□□□□□ -0.43
HMGB3-204ENST00000448905 SLBPQ14493 270 aaKnown RBP eCLIP12.35□□□□□ -0.43
HMGB3-204ENST00000448905 SLC10A1Q14973 349 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 XKR6Q5GH73 641 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 ZNF585AQ6P3V2 769 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 TMEM200AQ86VY9 491 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 CCDC71Q8IV32 467 aaPredicted RBP12.35□□□□□ -0.43
HMGB3-204ENST00000448905 MARVELD2Q8N4S9 558 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 FAM47BQ8NA70 645 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 OR8K3Q8NH51 312 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 OR14A16Q8NHC5 309 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 SLCO2A1Q92959 643 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 RUNDC3BQ96NL0 473 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 EHD1Q9H4M9 534 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 LDAHQ9H6V9 325 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 TNFRSF10DQ9UBN6 386 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 COPS7AQ9UBW8 275 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 VTI1BQ9UEU0 232 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 ACAD8Q9UKU7 415 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 CHMP2BQ9UQN3 213 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 AKAP9Q99996 3911 aa12.35□□□□□ -0.43
HMGB3-204ENST00000448905 ANKRD17O75179 2603 aaKnown RBP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 CPAMD8Q8IZJ3 1885 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 A0A0G2JN53 185 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 CTAGE15A4D2H0 777 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 NPEPPSL1A6NEC2 478 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 FAM166BA8MTA8 275 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 ZSCAN12O43309 604 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 OR6B1O95007 311 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 COX7A2P14406 83 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 IGFBP2P18065 325 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 MSX1P28360 303 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 ZFP36L2P47974 494 aaKnown RBP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 KCNC1P48547 511 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 PGGT1BP53609 377 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 LIM2P55344 173 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 TBL3Q12788 808 aaKnown RBP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 PAGE2BQ5JRK9 111 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 CDKL4Q5MAI5 379 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 WLSQ5T9L3 541 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 ABHD17CQ6PCB6 329 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 TRMT10BQ6PF06 316 aaKnown RBP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 B3GNT6Q6ZMB0 384 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 FAM47EQ6ZV65 393 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 CTAGE6Q86UF2 777 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 ZC3HC1Q86WB0 502 aaKnown RBP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 FAM109AQ8N4B1 249 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 GOLM1Q8NBJ4 401 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 OR5M9Q8NGP3 310 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 SARAFQ96BY9 339 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 RHBDF1Q96CC6 855 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 KCNC2Q96PR1 638 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 RASL10BQ96S79 203 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 SMC6Q96SB8 1091 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 OR8D2Q9GZM6 311 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 EXO5Q9H790 373 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 ZDHHC11Q9H8X9 412 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 LIN28AQ9H9Z2 209 aaKnown RBP12.34□□□□□ -0.43
HMGB3-204ENST00000448905 IL1RL2Q9HB29 575 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 POPDC3Q9HBV1 291 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 SACM1LQ9NTJ5 587 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 TXNDC16Q9P2K2 825 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 SNX12Q9UMY4 172 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 DAPP1Q9UN19 280 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 CELSR1Q9NYQ6 3014 aa12.34□□□□□ -0.43
HMGB3-204ENST00000448905 FAM95CA0A1B0GW59 222 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 NCF1BA6NI72 391 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 NCF1CA8MVU1 366 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 CYR61O00622 381 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 SUSD5O60279 629 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 STK16O75716 305 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 NCF1P14598 390 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 PPP2R1BP30154 601 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 HNRNPH1P31943 449 aaKnown RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 PEX19P40855 299 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 SOX3P41225 446 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 MAN2A2P49641 1150 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 ART1P52961 327 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 NUP107P57740 925 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TAS2R39P59534 338 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 RNF4P78317 190 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TSNQ15631 228 aaKnown RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 ZNF750Q32MQ0 723 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 EMC4Q5J8M3 183 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 C16orf47Q6ZP98 133 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 CHSY3Q70JA7 882 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms