RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 C5AR2Q9P296 337 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 MAP10Q9P2G4 905 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF490Q9ULM2 529 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-208ENST00000437607 PTGDR2Q9Y5Y4 395 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 TACC2O95359 2948 aa11.52□□□□□ -0.57
PTPRF-208ENST00000437607 MYO7BQ6PIF6 2116 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 IGKV1-8A0A0C4DH67 115 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 GOLGA8QA0A0J9YX86 632 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 OR2A25A4D2G3 310 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 GOLGA8OA6NCC3 632 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 GOLGA8NF8WBI6 632 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 SLC28A1O00337 649 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 SDHDO14521 159 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 CNOT3O75175 753 aaKnown RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 LINC00032P0C843 101 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 HSD3B1P14060 373 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 HSD3B2P26439 372 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 EPHA3P29320 983 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 GRIA3P42263 894 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 RPS15AP62244 130 aaKnown RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 ZIC1Q15915 447 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 SLC9B1Q4ZJI4 515 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 VWA5B1Q5TIE3 1220 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF425Q6IV72 752 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 EPGNQ6UW88 154 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 SCIMPQ6UWF3 145 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 MRGPREQ86SM8 312 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 PAQR7Q86WK9 346 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 RAB43Q86YS6 212 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 LAS2Q8IYD9 372 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 CISD2Q8N5K1 135 aaKnown RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 GBP7Q8N8V2 638 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 OR7G3Q8NG95 312 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 FLVCR1-AS1Q8TAF5 88 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 DPH2Q9BQC3 489 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 EBF4Q9BQW3 602 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 CENPKQ9BS16 269 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF552Q9H707 407 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 ZBTB20Q9HC78 741 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-208ENST00000437607 DMRT3Q9NQL9 472 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 ADGRE2Q9UHX3 823 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 SERTAD3Q9UJW9 196 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 TRIM33Q9UPN9 1127 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 NTNG1Q9Y2I2 539 aa11.51□□□□□ -0.57
PTPRF-208ENST00000437607 CSMD2Q7Z408 3487 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 FEZF1A0PJY2 475 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ANKDD1BA6NHY2 528 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 E9PBE3 544 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 MAP3K7O43318 606 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 OR1F1O43749 312 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 KLHL41O60662 606 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 DCTN3O75935 186 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 RSL1D1O76021 490 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 PDYNP01213 254 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 BCL6P41182 706 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 PIK3CBP42338 1070 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 IDH3AP50213 366 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 YBX1P67809 324 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ABRAXAS2Q15018 415 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 TERF2Q15554 542 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 DEFB110Q30KQ9 67 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 UGT3A2Q3SY77 523 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ATP6AP1LQ52LC2 224 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 FIGLAQ6QHK4 219 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 IGFL3Q6UXB1 125 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 PIGWQ7Z7B1 504 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF740Q8NDX6 193 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 OR4K1Q8NGD4 311 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 HUS1BQ8NHY5 278 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 WDR20Q8TBZ3 569 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ACTRT2Q8TDY3 377 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 SEC16BQ96JE7 1060 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 MAELQ96JY0 434 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 PPP3R2Q96LZ3 170 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 GBP5Q96PP8 586 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 MTERF1Q99551 399 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 BARD1Q99728 777 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 CCDC28BQ9BUN5 200 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ACPTQ9BZG2 426 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 SPRTNQ9H040 489 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 TUBB1Q9H4B7 451 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 WDR55Q9H6Y2 383 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 NT5DC2Q9H857 520 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 BRF2Q9HAW0 419 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 FARSBQ9NSD9 589 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 G3BP2Q9UN86 482 aaKnown RBP11.5□□□□□ -0.57
PTPRF-208ENST00000437607 SLC12A4Q9UP95 1085 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 KLHL20Q9Y2M5 609 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 KLK4Q9Y5K2 254 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 FBN2P35556 2912 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 CELSR1Q9NYQ6 3014 aa11.5□□□□□ -0.57
PTPRF-208ENST00000437607 ATP6AP2A0A1C7CYW4 349 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 C9J4A7 227 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 ZNF195O14628 629 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 RRP9O43818 475 aaKnown RBP11.49□□□□□ -0.57
PTPRF-208ENST00000437607 NRP2O60462 931 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 ATP6AP2O75787 350 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SERPIND1P05546 499 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 SLC35G6P0C7Q6 338 aa11.49□□□□□ -0.57
PTPRF-208ENST00000437607 AHRP35869 848 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms