RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ZNF77Q15935 545 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 ARMC8Q8IUR7 673 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 ZNF547Q8IVP9 402 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 LRRC56Q8IYG6 542 aaPredicted RBP11.28□□□□□ -0.6
CD44-209ENST00000433892 REM2Q8IYK8 340 aaPredicted RBP11.28□□□□□ -0.6
CD44-209ENST00000433892 GPR65Q8IYL9 337 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 METTL4Q8N3J2 472 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 AMER2Q8N7J2 671 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 ZNF557Q8N988 423 aaPredicted RBP11.28□□□□□ -0.6
CD44-209ENST00000433892 FBXO15Q8NCQ5 510 aaPredicted RBP11.28□□□□□ -0.6
CD44-209ENST00000433892 HTRA1Q92743 480 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 TOX2Q96NM4 488 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 CDADC1Q9BWV3 514 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 CCDC177Q9NQR7 707 aaPredicted RBP11.28□□□□□ -0.6
CD44-209ENST00000433892 TAAR2Q9P1P5 351 aa11.28□□□□□ -0.6
CD44-209ENST00000433892 PLK4O00444 970 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 SPINT1O43278 529 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 RECKO95980 971 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 IFNA14P01570 189 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 ADRA2AP08913 450 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 ARAFP10398 606 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 RPL3P39023 403 aaKnown RBP11.27□□□□□ -0.61
CD44-209ENST00000433892 NFE2L1Q14494 772 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 RPS26P11Q5JNZ5 115 aaPredicted RBP11.27□□□□□ -0.61
CD44-209ENST00000433892 RAET1GQ6H3X3 334 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 KLHL17Q6TDP4 642 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 TMIGD1Q6UXZ0 262 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 LYSMD2Q8IV50 215 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 SLC44A2Q8IWA5 706 aaPredicted RBP11.27□□□□□ -0.61
CD44-209ENST00000433892 NRSN1Q8IZ57 195 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 COQ10AQ96MF6 247 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 Q96MT0 163 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 OR5M11Q96RB7 305 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 RAD9AQ99638 391 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 NRTNQ99748 197 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 CXorf36Q9H7Y0 433 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 TBC1D14Q9P2M4 693 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 ANGPT4Q9Y264 503 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 IFT52Q9Y366 437 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 PRKAB1Q9Y478 270 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 ENPP4Q9Y6X5 453 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 NINQ8N4C6 2090 aa11.27□□□□□ -0.61
CD44-209ENST00000433892 CNOT3O75175 753 aaKnown RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 POP7O75817 140 aaKnown RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 KRT75O95678 551 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 IFNW1P05000 195 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CBLP22681 906 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CHMP24386 653 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 GPR1P46091 355 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 HMGA2P52926 109 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CDC42P60953 191 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 DSTNP60981 165 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 MESP2Q0VG99 397 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 PUM1Q14671 1186 aaKnown RBP eCLIP11.26□□□□□ -0.61
CD44-209ENST00000433892 MED22Q15528 200 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 LEXMQ3ZCV2 418 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 FBXO43Q4G163 708 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 BCL7AQ4VC05 210 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 ARHGAP15Q53QZ3 475 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 TPRG1LQ5T0D9 272 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 STEAP3Q658P3 488 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CEACAM20Q6UY09 585 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 VN1R5Q7Z5H4 357 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 TAGAPQ8N103 731 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 FAM83FQ8NEG4 500 aaPredicted RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 LRIG1Q96JA1 1093 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 EPHX3Q9H6B9 360 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 ITM2CQ9NQX7 267 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 QPCTLQ9NXS2 382 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CCDC88CQ9P219 2028 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 RTCAO00442 366 aaKnown RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 FFAR1O14842 300 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 DNTTP04053 509 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CCL5P13501 91 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 PTPN2P17706 415 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 RHCEP18577 417 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 MAGP20916 626 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 GTF2E2P29084 291 aaKnown RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 CNR2P34972 360 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 PIK3CBP42338 1070 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 TMED10P49755 219 aaKnown RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 MNX1P50219 401 aaPredicted RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 TP53BP2Q13625 1128 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 IRF3Q14653 427 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 EIF4HQ15056 248 aaKnown RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 PLPP4Q5VZY2 271 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 TNFAIP8L2Q6P589 184 aaPredicted RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 PTCHD4Q6ZW05 846 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 CLIP4Q8N3C7 705 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 ING5Q8WYH8 240 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 NLNQ9BYT8 704 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 ABCG4Q9H172 646 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 MIR1-1HGQ9H1L0 117 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 NMNAT1Q9HAN9 279 aaPredicted RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 ASF1AQ9Y294 204 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 PCDHGA3Q9Y5H0 932 aa11.26□□□□□ -0.61
CD44-209ENST00000433892 PCYT1BQ9Y5K3 369 aaPredicted RBP11.26□□□□□ -0.61
CD44-209ENST00000433892 TRBV4-1A0A0J9YWV2 114 aa11.25□□□□□ -0.61
CD44-209ENST00000433892 CARNS1A5YM72 827 aa11.25□□□□□ -0.61
CD44-209ENST00000433892 A8MVJ9 347 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms