RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SNX15Q9NRS6 342 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 TMEM184CQ9NVA4 438 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 PDE10AQ9Y233 779 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF469Q96JG9 3925 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 KCNE1BA0A087WTH5 132 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 A0A096LPK6 155 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 A0A1W2PPM1 405 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 PINLYPA6NC86 204 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 GOLGA6L10A6NI86 522 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 E9PLN8 166 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 PHGDHO43175 533 aaKnown RBP12.06□□□□□ -0.48
LINC00339-202ENST00000416769 CHST10O43529 356 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 HS6ST1O60243 411 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 CDC40O60508 579 aaKnown RBP eCLIP12.06□□□□□ -0.48
LINC00339-202ENST00000416769 SASH3O75995 380 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 PDE9AO76083 593 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 MYZAPP0CAP1 466 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 COL6A2P12110 1019 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF37AP17032 561 aaPredicted RBP12.06□□□□□ -0.48
LINC00339-202ENST00000416769 IGFBP2P18065 325 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 AGTR2P50052 363 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 MEOX1P50221 254 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 GPR85P60893 370 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 RPS15AP62244 130 aaKnown RBP12.06□□□□□ -0.48
LINC00339-202ENST00000416769 AP2B1P63010 937 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 NAE1Q13564 534 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 DEFB134Q4QY38 66 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 SH2D5Q6ZV89 423 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 TRABD2AQ86V40 505 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 RPS19BP1Q86WX3 136 aaKnown RBP12.06□□□□□ -0.48
LINC00339-202ENST00000416769 SLC5A8Q8N695 610 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 TMEM178AQ8NBL3 297 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 PLPP5Q8NEB5 264 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 CA5BP1Q8WTZ4 195 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 EEF1AKMT1Q8WVE0 214 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 SLC13A3Q8WWT9 602 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 PYCR2Q96C36 320 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 LPAR4Q99677 370 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 VKORC1Q9BQB6 163 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 AICDAQ9GZX7 198 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF446Q9NWS9 450 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 UTP6Q9NYH9 597 aaKnown RBP12.06□□□□□ -0.48
LINC00339-202ENST00000416769 SENP1Q9P0U3 644 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 IKZF3Q9UKT9 509 aa12.06□□□□□ -0.48
LINC00339-202ENST00000416769 A0A0G2JMM0 328 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 A0A1W2PPB8 328 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 A0A1W2PRS3 328 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 KIR3DP1A8MWS1 328 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 MAGEB17A8MXT2 336 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 KLHL2O95198 593 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 TSPAN12O95859 305 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 TPOP07202 933 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 FHP07954 510 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF888P0CJ79 500 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 SLC35E2BP0CK96 405 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CCDC166P0CW27 439 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 PPP2R1BP30154 601 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 HSD17B2P37059 387 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 HNF4AP41235 474 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 MLF1P58340 268 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 SLC18A2Q05940 514 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 TFF3Q07654 80 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 SNTB1Q13884 538 aaKnown RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF460Q14592 562 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CMPK2Q5EBM0 449 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 EMC4Q5J8M3 183 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CATSPEREQ5SY80 951 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 AGBL2Q5U5Z8 902 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CAPN13Q6MZZ7 669 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 AGTRAPQ6RW13 159 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 MDGA2Q7Z553 956 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 TBC1D1Q86TI0 1168 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 LCA5Q86VQ0 697 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 SULF2Q8IWU5 870 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 AFAP1L2Q8N4X5 818 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 MFSD9Q8NBP5 474 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CAMKVQ8NCB2 501 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 NFAM1Q8NET5 270 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 OR52N2Q8NGI0 321 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 FAM57AQ8TBR7 257 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 PHF10Q8WUB8 498 aaKnown RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 ANKRD49Q8WVL7 239 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 OR4K3Q96R72 315 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 DERL2Q9GZP9 239 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 STMN4Q9H169 189 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 VPS11Q9H270 941 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CENPHQ9H3R5 247 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 LIN28AQ9H9Z2 209 aaKnown RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 NECTIN3Q9NQS3 549 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 DCDC2Q9UHG0 476 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF223Q9UK11 482 aaPredicted RBP12.05□□□□□ -0.48
LINC00339-202ENST00000416769 RNF6Q9Y252 685 aa12.05□□□□□ -0.48
LINC00339-202ENST00000416769 CCDC189A1A4V9 331 aa12.04□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF839A8K0R7 811 aa12.04□□□□□ -0.48
LINC00339-202ENST00000416769 PRRG2O14669 202 aa12.04□□□□□ -0.48
LINC00339-202ENST00000416769 TFECO14948 347 aaPredicted RBP12.04□□□□□ -0.48
LINC00339-202ENST00000416769 SLC16A5O15375 505 aa12.04□□□□□ -0.48
LINC00339-202ENST00000416769 NDUFS4O43181 175 aa12.04□□□□□ -0.48
LINC00339-202ENST00000416769 ZBTB14O43829 449 aa12.04□□□□□ -0.48
LINC00339-202ENST00000416769 PRKNO60260 465 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms