RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 KLRC4-KLRK1H3BQV0 150 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 SAP18O00422 153 aaKnown RBP10.76□□□□□ -0.69
USP4-204ENST00000416417 CYR61O00622 381 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 CCNT2O60583 730 aaKnown RBP10.76□□□□□ -0.69
USP4-204ENST00000416417 LDB3O75112 727 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 FAM155BO75949 473 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 EPORP19235 508 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 TFEBP19484 476 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 AGAP20933 346 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 SSR4P51571 173 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 ZNF750Q32MQ0 723 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 ABHD17CQ6PCB6 329 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 UBE3DQ7Z6J8 389 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 KRT78Q8N1N4 520 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 ARMC10Q8N2F6 343 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 OR2L5Q8NG80 312 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 FAM57AQ8TBR7 257 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 ANKRD7Q92527 254 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 MAPKAP1Q9BPZ7 522 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 VKORC1Q9BQB6 163 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 CCDC77Q9BR77 488 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 SORBS1Q9BX66 1292 aaKnown RBP10.76□□□□□ -0.69
USP4-204ENST00000416417 UCK2Q9BZX2 261 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 DERL2Q9GZP9 239 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 CD274Q9NZQ7 290 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 TNFRSF10DQ9UBN6 386 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 ERVK-11Q9UQG0 969 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 SAR1BQ9Y6B6 198 aa10.76□□□□□ -0.69
USP4-204ENST00000416417 TEP1Q99973 2627 aaKnown RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 NKX2-6A6NCS4 301 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 FAM90A27PA6NNH2 459 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 CLDN4O14493 209 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 ZNF354AO60765 605 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 CLEC3AO75596 197 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 ZFAND5O76080 213 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 CD1DP15813 335 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 SOX3P41225 446 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 HSD17B7P56937 341 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 PLGLB1Q02325 96 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 TRIM40Q6P9F5 258 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 MEX3BQ6ZN04 569 aaKnown RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 ZNF793Q6ZN11 406 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 CCDC71Q8IV32 467 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 OR4N5Q8IXE1 308 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 ZFP62Q8NB50 900 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 C16orf52Q8NHV5 167 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 CA5BP1Q8WTZ4 195 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 PYROXD1Q8WU10 500 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 PTPMT1Q8WUK0 201 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 SERINC2Q96SA4 455 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 NAPGQ99747 312 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 NPLQ9BXD5 320 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 ALOXE3Q9BYJ1 711 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 OR8D2Q9GZM6 311 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 COPS7BQ9H9Q2 264 aaPredicted RBP10.75□□□□□ -0.69
USP4-204ENST00000416417 GRPEL1Q9HAV7 217 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 ADAP2Q9NPF8 381 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 PRDM7Q9NQW5 492 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 PYCARDQ9ULZ3 195 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 DAPP1Q9UN19 280 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 LIPGQ9Y5X9 500 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 AKAP9Q99996 3911 aa10.75□□□□□ -0.69
USP4-204ENST00000416417 A8MVJ9 347 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 STK16O75716 305 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PCNAP12004 261 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 TNNI3P19429 210 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 MSH2P43246 934 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 HK2P52789 917 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 MTTPP55157 894 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 GPX6P59796 221 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PPIAP62937 165 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 POU4F1Q01851 419 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 DLG1Q12959 904 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 CHIT1Q13231 466 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PDK4Q16654 411 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 ADPRMQ3LIE5 342 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 EMC4Q5J8M3 183 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 CMC1Q7Z7K0 106 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 ZNF595Q8IYB9 648 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 POGLUT1Q8NBL1 392 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PSD4Q8NDX1 1056 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 TTLQ8NG68 377 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 OR2M7Q8NG81 312 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 OR5M9Q8NGP3 310 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PHF10Q8WUB8 498 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 ASB15Q8WXK1 588 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PTCD3Q96EY7 689 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 RUNDC3BQ96NL0 473 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 RASL10BQ96S79 203 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 ALG9Q9H6U8 611 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 NT5DC2Q9H857 520 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 POPDC3Q9HBV1 291 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 TIMMDC1Q9NPL8 285 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 HPF1Q9NWY4 346 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 RNF112Q9ULX5 631 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PPIEQ9UNP9 301 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 YARS2Q9Y2Z4 477 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 CLCA3PQ9Y6N3 262 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 ADGRG4Q8IZF6 3080 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PCNX1Q96RV3 2341 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms