RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ADPRHL2Q9NX46 363 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 PCDHGB6Q9Y5F9 930 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 V9GYH0 126 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ZW10O43264 779 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ENTPD6O75354 484 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 EPPINO95925 133 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 RPLP0P05388 317 aaKnown RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 HBQ1P09105 142 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 SSTR4P31391 388 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 RPS19P39019 145 aaKnown RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 SOX3P41225 446 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 PRLHRP49683 370 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 CLK1P49759 484 aaKnown RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 EPHB3P54753 998 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ZNF33BQ06732 778 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 KCNC3Q14003 757 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 VEPH1Q14D04 833 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 TSTQ16762 297 aaKnown RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 CEACAM20Q6UY09 585 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 POC5Q8NA72 575 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 VANGL1Q8TAA9 524 aaPredicted RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 BTN2A2Q8WVV5 523 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 CAPSLQ8WWF8 208 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ASZ1Q8WWH4 475 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ATL1Q8WXF7 558 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ASB15Q8WXK1 588 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 TMEM169Q96HH4 297 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 COL21A1Q96P44 957 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 OR2A14Q96R47 310 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 BHLHE41Q9C0J9 482 aaPredicted RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 EHD1Q9H4M9 534 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 LHX9Q9NQ69 397 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ERVK13-1Q9NX77 482 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 POFUT2Q9Y2G5 429 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 HOXA2O43364 376 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 GPR37L1O60883 481 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 DLGAP3O95886 979 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CKMT1AP12532 417 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 HSD3B1P14060 373 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 HSD3B2P26439 372 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 VIPR1P32241 457 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 IRS1P35568 1242 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 HNF4AP41235 474 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CRYBB2P43320 205 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 GAS1P54826 345 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 IFI44LQ53G44 452 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 SYTL1Q8IYJ3 562 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CELF5Q8N6W0 485 aaKnown RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 PAF1Q8N7H5 531 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 AQP11Q8NBQ7 271 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 DENND6BQ8NEG7 585 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 UTP15Q8TED0 518 aaKnown RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 FCGR1BQ92637 280 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CLP1Q92989 425 aaKnown RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 GPA33Q99795 319 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 KCNS3Q9BQ31 491 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 SLC6A16Q9GZN6 736 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ATP11BQ9Y2G3 1177 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 A3GALT2U3KPV4 340 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 TSPAN11A1L157 253 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 NEDD8-MDP1E9PL57 170 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 PBLDP30039 288 aaPredicted RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 TAS2R50P59544 299 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 DEPDC1Q5TB30 811 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CCBE1Q6UXH8 406 aaPredicted RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 KIAA0907Q7Z7F0 614 aaPredicted RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 HEATR4Q86WZ0 1026 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 P3H2Q8IVL5 708 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 TRAM1L1Q8N609 369 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 SCAIQ8N9R8 606 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 PIP5K1AQ99755 562 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 SGPP1Q9BX95 441 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 EMILIN2Q9BXX0 1053 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ANKHQ9HCJ1 492 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ZNF282Q9UDV7 671 aaPredicted RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 GNG14A0A1W2PPG7 69 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 PIPSLA2A3N6 862 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ISPDA4D126 451 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 WASHC1A8K0Z3 465 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 HEPACAM2A8MVW5 462 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ADAMDEC1O15204 470 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 SEMA3DO95025 777 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 NTN1O95631 604 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 HSMCR30P0CW71 290 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ARAFP10398 606 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CD72P21854 359 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CSNK2BP67870 215 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 CDK6Q00534 326 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 TEKQ02763 1124 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 ZNF763Q0D2J5 394 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 TMEM115Q12893 351 aaPredicted RBP9.41□□□□□ -0.9
SS18-203ENST00000415083 SLBPQ14493 270 aaKnown RBP eCLIP9.41□□□□□ -0.9
SS18-203ENST00000415083 BAK1Q16611 211 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 SPIN4Q56A73 249 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 GCNT6Q5T4J0 391 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 FRMPD2BQ6IN97 320 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 LILRA6Q6PI73 481 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 BRAT1Q6PJG6 821 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 WASH2PQ6VEQ5 465 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 FAM83HQ6ZRV2 1179 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms