RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SPA17Q15506 151 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CCDC6Q16204 474 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DPYSL2Q16555 572 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TAZQ16635 292 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 HNRNPA1L2Q32P51 320 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF528Q3MIS6 628 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FAM153CQ494X1 144 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FBLN7Q53RD9 439 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RUNDC3AQ59EK9 446 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FAM182AQ5T1J6 154 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 AGAP7PQ5VUJ5 663 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 NEK5Q6P3R8 708 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TMEM81Q6P7N7 255 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ZC3H14Q6PJT7 736 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 UGT2A3Q6UWM9 527 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 LINC00299Q6ZSB3 139 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FRA10AC1Q70Z53 315 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ASCL5Q7RTU5 278 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SLC46A3Q7Z3Q1 461 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PEX26Q7Z412 305 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CAMKMTQ7Z624 323 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SETD3Q86TU7 594 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SLCO6A1Q86UG4 719 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 WDR5BQ86VZ2 330 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 STK40Q8N2I9 435 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CENPSQ8N2Z9 138 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 KDM8Q8N371 416 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 KIF2BQ8N4N8 673 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 MARVELD2Q8N4S9 558 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DEFB119Q8N690 84 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 NIPA2Q8N8Q9 360 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DCAF4L2Q8NA75 395 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TTLQ8NG68 377 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OR52K1Q8NGK4 314 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ZFP28Q8NHY6 868 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 LHFPL5Q8TAF8 219 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ENKURQ8TC29 256 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF398Q8TD17 642 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ADAMTS16Q8TE57 1224 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ASB11Q8WXH4 323 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 C11orf24Q96F05 449 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 HMCESQ96FZ2 354 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FBXL20Q96IG2 436 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 LRIG1Q96JA1 1093 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DNAJC1Q96KC8 554 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ADAD1Q96M93 576 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SPATA13Q96N96 652 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CSPG4P5Q96PW8 444 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 VPS35Q96QK1 796 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PRRX2Q99811 253 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 MYOCQ99972 504 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 BTBD2Q9BX70 525 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TBC1D10AQ9BXI6 508 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CALN1Q9BXU9 219 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 GON7Q9BXV9 100 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TM6SF2Q9BZW4 377 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 RNF32Q9H0A6 362 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 KCNH6Q9H252 994 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TMEM245Q9H330 911 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OSGEPL1Q9H4B0 414 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 UCK1Q9HA47 277 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 NEK6Q9HC98 313 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PRSS16Q9NQE7 514 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FARSBQ9NSD9 589 aaKnown RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CENPMQ9NSP4 180 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TMEM248Q9NWD8 314 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 EBF1Q9UH73 591 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 MBD1Q9UIS9 605 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SLC25A13Q9UJS0 675 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 ANGPTL2Q9UKU9 493 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 SNX7Q9UNH6 387 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 FAF1Q9UNN5 650 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 PLA2G4CQ9UP65 541 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 NAALAD2Q9Y3Q0 740 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 OR51B4Q9Y5P0 310 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 KLF2Q9Y5W3 355 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-202ENST00000409915 TEX264Q9Y6I9 313 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CEPT1Q9Y6K0 416 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DUSP10Q9Y6W6 482 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 LAMA1P25391 3075 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 CFAP54Q96N23 3096 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 DMXL1Q9Y485 3027 aa4.38□□□□□ -1.71
SF3B1-202ENST00000409915 LOC102723996A0A087X1L8 192 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 LOC105369274A0A096LPK9 316 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 LOC102723532A0A0G2JNH3 316 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 EDDM13A0A1B0GTR0 161 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 TCRBV7S2A1N4TA0A589 114 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 ILVBLA1L0T0 632 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 PRR23AA6NEV1 266 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 OR6C65A6NJZ3 312 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 ZNF839A8K0R7 811 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 KDM4EB2RXH2 506 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-202ENST00000409915 CCDC188H7C350 402 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 J3KR12 359 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 DFFAO00273 331 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 MID1O15344 667 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 HDAC3O15379 428 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 PJA2O43164 708 aa4.37□□□□□ -1.71
SF3B1-202ENST00000409915 BUD23O43709 281 aaKnown RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms