RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 EPHX3Q9H6B9 360 aa9.4□□□□□ -0.9
MSH2-202ENST00000406134 SH3BP4Q9P0V3 963 aa9.4□□□□□ -0.9
MSH2-202ENST00000406134 SPASTQ9UBP0 616 aa9.4□□□□□ -0.9
MSH2-202ENST00000406134 SNX11Q9Y5W9 270 aa9.4□□□□□ -0.9
MSH2-202ENST00000406134 OTOL1A6NHN0 477 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 PLPP1O14494 284 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 ADAMDEC1O15204 470 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 SSX4O60224 188 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 C1GALT1C1LP0DN25 315 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 PPIBP23284 216 aaKnown RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 FRKP42685 505 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 SPIBQ01892 262 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 IFI44LQ53G44 452 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 GCNT6Q5T4J0 391 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 SPRED2Q7Z698 418 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 LSRQ86X29 649 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 ATL1Q8WXF7 558 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 STARD8Q92502 1023 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TMEM159Q96B96 161 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 FAM129BQ96TA1 746 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TCF25Q9BQ70 676 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 ASAH2Q9NR71 780 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 SAGE1Q9NXZ1 904 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 RHCGQ9UBD6 479 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 POFUT2Q9Y2G5 429 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TSC22D4Q9Y3Q8 395 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TRBV4-1A0A0J9YWV2 114 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 GNG14A0A1W2PPG7 69 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 ARRDC5A6NEK1 342 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 AIREO43918 545 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 IL3P08700 152 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 ETV6P41212 452 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CTSKP43235 329 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 RGS6P49758 472 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 GANABQ14697 944 aaKnown RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 LEXMQ3ZCV2 418 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 COLEC12Q5KU26 742 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 C1orf53Q5VUE5 145 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 NXPE4Q6UWF7 544 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CACTIN-AS1Q8N1I8 211 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 SPPL2AQ8TCT8 520 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 ARRDC3Q96B67 414 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TIFAQ96CG3 184 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 AP2M1Q96CW1 435 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 IL17FQ96PD4 163 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 PIP5K1AQ99755 562 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 OR52A5Q9H2C5 316 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TDP1Q9NUW8 608 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CAB39Q9Y376 341 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 MAP4K5Q9Y4K4 846 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TRIM43BA6NCK2 446 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CATP04040 527 aaKnown RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 KLK1P06870 262 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 COL4A2P08572 1712 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 POU2F1P14859 743 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CSF2RAP15509 400 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CD72P21854 359 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 RPS26P62854 115 aaKnown RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 DMC1Q14565 340 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 ZNF404Q494X3 552 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 SYTL3Q4VX76 610 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 SAXO2Q658L1 398 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 HORMAD2Q8N7B1 307 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TP53I13Q8NBR0 393 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 MINDY2Q8NBR6 621 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 DENND6BQ8NEG7 585 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 FCGR1BQ92637 280 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 TRIM43Q96BQ3 446 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 ZHX1-C8orf76Q96EF9 292 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 LINC00615Q96LM1 132 aaPredicted RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 ARPC5LQ9BPX5 153 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 CDCA4Q9BXL8 241 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 MS4A12Q9NXJ0 267 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 PAIP2BQ9ULR5 123 aaKnown RBP9.39□□□□□ -0.91
MSH2-202ENST00000406134 PLAGL1Q9UM63 463 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 IFT52Q9Y366 437 aa9.39□□□□□ -0.91
MSH2-202ENST00000406134 PRRT4C9JH25 899 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 DNTTP04053 509 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 DGKEP52429 567 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 CSNK2BP67870 215 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 CDK6Q00534 326 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 RBBP4Q09028 425 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 ELP6Q0PNE2 266 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 ST3GAL4Q11206 333 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 NFE2L1Q14494 772 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 CCDC92Q53HC0 331 aaPredicted RBP9.38□□□□□ -0.91
MSH2-202ENST00000406134 ADCK1Q86TW2 530 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 RBM45Q8IUH3 476 aaKnown RBP9.38□□□□□ -0.91
MSH2-202ENST00000406134 CYP4Z2PQ8N1L4 340 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 PARP16Q8N5Y8 322 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 HCAR2Q8TDS4 363 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 Q96MT0 163 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 BARHL1Q9BZE3 327 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 NMNAT1Q9HAN9 279 aaPredicted RBP9.38□□□□□ -0.91
MSH2-202ENST00000406134 TAS2R9Q9NYW1 312 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 CCDC59Q9P031 241 aaKnown RBP9.38□□□□□ -0.91
MSH2-202ENST00000406134 ABHD14A-ACY1A0A1B0GW23 586 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 MGAT4DA6NG13 374 aa9.38□□□□□ -0.91
MSH2-202ENST00000406134 PCBP4P57723 403 aaKnown RBP9.38□□□□□ -0.91
MSH2-202ENST00000406134 LSM11P83369 360 aaKnown RBP eCLIP9.38□□□□□ -0.912e-11■■■■□ 20.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms