RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MAPKAP1Q9BPZ7 522 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CRB3Q9BUF7 120 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ADAMTS10Q9H324 1103 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CXorf21Q9HAI6 301 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TPT1P8Q9HAU6 139 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HIF3AQ9Y2N7 669 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 TMED5Q9Y3A6 229 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PRSS51A0A1B0GVH4 220 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PLSCR5A0PG75 271 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 SH3PXD2BA1X283 911 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 UNCXA6NJT0 531 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 H7C417 338 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CD53P19397 219 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 IMPDH1P20839 514 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CXCL12P48061 93 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ZNF280AP59817 542 aaPredicted RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 TAP2Q03519 686 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 BTBD16Q32M84 506 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 RAB8BQ92930 207 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ZNF641Q96N77 438 aaPredicted RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 TSGA13Q96PP4 275 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 NELFAQ9H3P2 528 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 NSUN3Q9H649 340 aaKnown RBP6.94□□□□□ -1.3
UPF2-203ENST00000397053 MAGEE1Q9HCI5 957 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 PIGVQ9NUD9 493 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 DNAJC27Q9NZQ0 273 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 MLXQ9UH92 298 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 HS3ST4Q9Y661 456 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ROBO3Q96MS0 1386 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 ASXL3Q9C0F0 2248 aa6.94□□□□□ -1.3
UPF2-203ENST00000397053 CCDC163A0A0D9SF12 145 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 PCP4L1A6NKN8 68 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 IFNA5P01569 189 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 FAM163BP0C2L3 166 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 SLC2A2P11168 524 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 TUBG1P23258 451 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 SERINC3Q13530 473 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 C6orf52Q5T4I8 152 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ADGRD1Q6QNK2 874 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 LRTOMTQ8WZ04 291 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 NR4A3Q92570 626 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 CGREF1Q99674 301 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 SLC2A11Q9BYW1 496 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 C12orf65Q9H3J6 166 aaKnown RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 MVB12BQ9H7P6 319 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 LMAN1LQ9HAT1 526 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 NGBQ9NPG2 151 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ATPIF1Q9UII2 106 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ATXN7L1Q9ULK2 861 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 TLL2Q9Y6L7 1015 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 RRP8O43159 456 aaKnown RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 PPM1BO75688 479 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 GABBR2O75899 941 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 CNOT4O95628 575 aaKnown RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 PTNP21246 168 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 MEF2AQ02078 507 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 MLLT1Q03111 559 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 DUOXA1Q1HG43 343 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 MS4A13Q5J8X5 152 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 RAB12Q6IQ22 244 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ZNF598Q86UK7 904 aaKnown RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 NPAS3Q8IXF0 933 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ZNF808Q8N4W9 903 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 TCEANCQ8N8B7 351 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 MINDY2Q8NBR6 621 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 NPLOC4Q8TAT6 608 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 MSLNLQ96KJ4 702 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 BMFQ96LC9 184 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 DPH7Q9BTV6 452 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 TMED9Q9BVK6 235 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 EHD1Q9H4M9 534 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 FAM120CQ9NX05 1096 aaKnown RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 CD207Q9UJ71 328 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 FBXL3Q9UKT7 428 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 EDARQ9UNE0 448 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 TMEM14AQ9Y6G1 99 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ACOX3O15254 700 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 GLSO94925 669 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 RAC2P15153 192 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 F8A1P23610 371 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 FOLR3P41439 243 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ARSFP54793 590 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 HSD17B7P56937 341 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 TAS2R43P59537 309 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 HHEXQ03014 270 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 TCTE1Q5JU00 501 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ANKRD26P1Q6NSI1 321 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 HAGHLQ6PII5 290 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 XKRXQ6PP77 449 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 CRELD2Q6UXH1 353 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 C3P1Q6ZMU1 363 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 DPY19L4Q7Z388 723 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 OR5J2Q8NH18 312 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 TBC1D15Q8TC07 691 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 CLEC4DQ8WXI8 215 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 ASB12Q8WXK4 309 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 HOXB13Q92826 284 aaPredicted RBP6.93□□□□□ -1.3
UPF2-203ENST00000397053 GLYATL1Q969I3 302 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 KCNC2Q96PR1 638 aa6.93□□□□□ -1.3
UPF2-203ENST00000397053 TMEM109Q9BVC6 243 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms