RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ZNF700Q9H0M5 742 aa9.75□□□□□ -0.85
NEDD8-202ENST00000396828 PSD3Q9NYI0 1048 aa9.75□□□□□ -0.85
NEDD8-202ENST00000396828 OPTCQ9UBM4 332 aa9.75□□□□□ -0.85
NEDD8-202ENST00000396828 SH2B3Q9UQQ2 575 aa9.75□□□□□ -0.85
NEDD8-202ENST00000396828 SCN2AQ99250 2005 aa9.75□□□□□ -0.85
NEDD8-202ENST00000396828 POLQO75417 2590 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 H7BY64 318 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 K7EPI3 171 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 TAPBPO15533 448 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 EDF1O60869 148 aaKnown RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 STK16O75716 305 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 WDR47O94967 919 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 SIX3O95343 332 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 BMP10O95393 424 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 RPS17P08708 135 aaKnown RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 TROVE2P10155 538 aaKnown RBP eCLIP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 EPB42P16452 691 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 HSPA7P48741 367 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 AGTR2P50052 363 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 EMP3P54852 163 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 GALNT1Q10472 559 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 LCP2Q13094 533 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 ARHGAP19Q14CB8 494 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 UNC50Q53HI1 259 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 ARL13AQ5H913 290 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 FCRLBQ6BAA4 426 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 CAPN13Q6MZZ7 669 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 AGTRAPQ6RW13 159 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 MBOAT1Q6ZNC8 495 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 FRMD7Q6ZUT3 714 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 LRRC70Q7Z2Q7 622 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 VN1R4Q7Z5H5 301 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 LRRC34Q8IZ02 419 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 AFAP1L2Q8N4X5 818 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 OR9A4Q8NGU2 314 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 ZNF483Q8TF39 744 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 NR4A3Q92570 626 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 PRAP1Q96NZ9 151 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 NPAS2Q99743 824 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 TGIF2Q9GZN2 237 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 FAM107BQ9H098 131 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 GSTO2Q9H4Y5 243 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 FGFR1OP2Q9NVK5 253 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 PCTPQ9UKL6 214 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 MKL2Q9ULH7 1088 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.74□□□□□ -0.85
NEDD8-202ENST00000396828 PCNX1Q96RV3 2341 aa9.74□□□□□ -0.85
NEDD8-202ENST00000396828 TRAV17A0A0B4J275 112 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 DYTNA2CJ06 578 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ENO4A6NNW6 628 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 PRSS44E7EML9 344 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ZNHIT1O43257 154 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ITM2AO43736 263 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 MAN1A2O60476 641 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 DNAJB6O75190 326 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 LYPLA1O75608 230 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 WFS1O76024 890 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 SEC24DO94855 1032 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 UNC5CO95185 931 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 FAM107AO95990 144 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 OTCP00480 354 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 EZRP15311 586 aaKnown RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 POU3F2P20265 443 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 CCND1P24385 295 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 CXCR2P25025 360 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 IMPA1P29218 277 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ARL1P40616 181 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 SLC6A12P48065 614 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 HK2P52789 917 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 OCRLQ01968 901 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 CLCQ05315 142 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 GTF2H2Q13888 395 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ZXDCQ2QGD7 858 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 FBXO48Q5FWF7 155 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 GTF2H2CQ6P1K8 395 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ADCK2Q7Z695 626 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 HOMEZQ8IX15 550 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 TEX9Q8N6V9 391 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 SNX31Q8N9S9 440 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 PIWIL2Q8TC59 973 aaKnown RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 TRPC4APQ8TEL6 797 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ITLN2Q8WWU7 325 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 RELTQ969Z4 430 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ATP6V1E2Q96A05 226 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ESAMQ96AP7 390 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 MVB12AQ96EY5 273 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 VPS50Q96JG6 964 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 TMEM79Q9BSE2 394 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 HES7Q9BYE0 225 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 VN1R1Q9GZP7 353 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ATG10Q9H0Y0 220 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 SLCO1B3Q9NPD5 702 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 MKKSQ9NPJ1 570 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 SEMA4BQ9NPR2 832 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 CCDC177Q9NQR7 707 aaPredicted RBP9.73□□□□□ -0.85
NEDD8-202ENST00000396828 DNAJC11Q9NVH1 559 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 CDC14AQ9UNH5 594 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 ENTPD4Q9Y227 616 aa9.73□□□□□ -0.85
NEDD8-202ENST00000396828 RAP2CQ9Y3L5 183 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms