RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ASMTP46597 345 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 SEPHS1P49903 392 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MC1RQ01726 317 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MAP4K2Q12851 820 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 DNASE1L3Q13609 305 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 PCOLCEQ15113 449 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 C3orf38Q5JPI3 329 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 CFAP157Q5JU67 520 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 PRSS41Q7RTY9 318 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 PPP1R32Q7Z5V6 425 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TMEM126BQ8IUX1 230 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 C16orf78Q8WTQ4 265 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 C10orf82Q8WW14 230 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 SELENOMQ8WWX9 145 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 THAP4Q8WY91 577 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 STARD8Q92502 1023 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 F2RL3Q96RI0 385 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ACAT2Q9BWD1 397 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ULBP3Q9BZM4 244 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 RNF32Q9H0A6 362 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 CLMPQ9H6B4 373 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ACSS1Q9NUB1 689 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF282Q9UDV7 671 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TCFL5Q9UL49 500 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MAN2B2Q9Y2E5 1009 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 A0A1W2PR48 441 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 OR6C76A6NM76 312 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 CHST10O43529 356 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 B3GALT2O43825 422 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 GUCY1B2O75343 617 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 JUNP05412 331 aaKnown RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FURINP09958 794 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FAM58BPP0C7Q3 252 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 AGXTP21549 392 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 DRD4P21917 467 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FBLP22087 321 aaKnown RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MAPK1P28482 360 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 STT3AP46977 705 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 IDH3AP50213 366 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF763Q0D2J5 394 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FUT7Q11130 342 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FOXC1Q12948 553 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TCHHL1Q5QJ38 904 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 THEMIS2Q5TEJ8 643 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 NOXRED1Q6NXP6 359 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 SAMD14Q8IZD0 417 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 CDYL2Q8N8U2 506 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 OR51Q1Q8NH59 317 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ELP5Q8TE02 316 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 CATSPER2Q96P56 530 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ELOVL6Q9H5J4 265 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 LRTM1Q9HBL6 345 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 RIC8BQ9NVN3 520 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TSR3Q9UJK0 312 aaKnown RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FARSAQ9Y285 508 aaKnown RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 DYTNA2CJ06 578 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 DNAJB6O75190 326 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 COX6A1P12074 109 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 LIFP15018 202 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 SDC1P18827 310 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 F8A1P23610 371 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 WNT3P56703 355 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 CYP4F3Q08477 520 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 SERTAD2Q14140 314 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 PRSS53Q2L4Q9 553 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 DPY19L1Q2PZI1 675 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 FBXO48Q5FWF7 155 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 OR52E8Q6IFG1 317 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 JMJD6Q6NYC1 403 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 C8orf82Q6P1X6 216 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TMEM64Q6YI46 380 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 BNC2Q6ZN30 1099 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ZCCHC23Q6ZST2 131 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 ANKRD37Q7Z713 158 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 GLB1L3Q8NCI6 653 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 GALNT6Q8NCL4 622 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MORN4Q8NDC4 146 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TMEM52Q8NDY8 209 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 TBC1D20Q96BZ9 403 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 BHLHE41Q9C0J9 482 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-202ENST00000394943 EPS8L2Q9H6S3 715 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 MMP25Q9NPA2 562 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 KCNK9Q9NPC2 374 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 PADI2Q9Y2J8 665 aa6.6□□□□□ -1.35
LIMA1-202ENST00000394943 KIF26BQ2KJY2 2108 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 TTC36A6NLP5 189 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 A8MU76 341 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 ALDOCP09972 364 aaKnown RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 SLC35E2P0CK97 266 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 GPX3P22352 226 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 ARL4DP49703 201 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 TLE3Q04726 772 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 RBBP5Q15291 538 aaKnown RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 MPEG1Q2M385 716 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 DEFB110Q30KQ9 67 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 GPR180Q86V85 440 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 CACNA2D3Q8IZS8 1091 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 SUN3Q8TAQ9 357 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 MIPOL1Q8TD10 442 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 EXT2Q93063 718 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms