RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 RAB42Q8N4Z0 105 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 OR2L3Q8NG85 312 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 OR8K5Q8NH50 307 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 HMGB4Q8WW32 186 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 RAB8BQ92930 207 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 MTERF3Q96E29 417 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 SCARF2Q96GP6 870 aaPredicted RBP14.34□□□□□ -0.11
GPC3-202ENST00000394299 DOHHQ9BU89 302 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 NPLQ9BXD5 320 aaPredicted RBP14.34□□□□□ -0.11
GPC3-202ENST00000394299 EBF1Q9UH73 591 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 BAG5Q9UL15 447 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 CORO2BQ9UQ03 480 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 GMEB1Q9Y692 573 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 MTCH2Q9Y6C9 303 aa14.34□□□□□ -0.11
GPC3-202ENST00000394299 A0A1W2PS29 197 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 J3KTA2 159 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 SEMA3DO95025 777 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 ALPPL2P10696 532 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 RPL3P39023 403 aaKnown RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 TPD52P55327 224 aaPredicted RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 TUBA4AP68366 448 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 CDK6Q00534 326 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 EEF1A2Q05639 463 aaKnown RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 RPS26P11Q5JNZ5 115 aaPredicted RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 IKBIPQ70UQ0 350 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 C8orf59Q8N0T1 100 aaPredicted RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 HORMAD2Q8N7B1 307 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 ZNF555Q8NEP9 628 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 OR52J3Q8NH60 311 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 OTUB1Q96FW1 271 aaPredicted RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 RSPO3Q9BXY4 272 aaPredicted RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 RIBC2Q9H4K1 309 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 EPS8L2Q9H6S3 715 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 ADPRHL2Q9NX46 363 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 TESMINQ9Y4I5 508 aa14.33□□□□□ -0.11
GPC3-202ENST00000394299 HEMK1Q9Y5R4 338 aaPredicted RBP14.33□□□□□ -0.11
GPC3-202ENST00000394299 VCANP13611 3396 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 TNRC18O15417 2968 aaPredicted RBP14.33□□□□□ -0.12
GPC3-202ENST00000394299 RASGRP1O95267 797 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 GABRG2P18507 467 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 DRD1P21728 446 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 IGFBP5P24593 272 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 RRM2P31350 389 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 SLC5A2P31639 672 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 SLC19A1P41440 591 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 ACTR1BP42025 376 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 SSR2P43308 183 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 RAB8AP61006 207 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 ACTR1AP61163 376 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 RAPSNQ13702 412 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 NEDD8Q15843 81 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 ZNF542PQ5EBM4 170 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 TTC23Q5W5X9 447 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 OLIG3Q7RTU3 272 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 PAGE2Q7Z2X7 111 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 NUDT13Q86X67 352 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 GALNT15Q8N3T1 639 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 MPP4Q96JB8 637 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 KLHL25Q9H0H3 589 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 RUBCNLQ9H714 662 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 DDX18Q9NVP1 670 aaKnown RBP14.33□□□□□ -0.12
GPC3-202ENST00000394299 THUMPD1Q9NXG2 353 aaKnown RBP14.33□□□□□ -0.12
GPC3-202ENST00000394299 DMTF1Q9Y222 760 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 LAMA1P25391 3075 aa14.33□□□□□ -0.12
GPC3-202ENST00000394299 KLHL33A6NCF5 533 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 TRIM64CA6NLI5 447 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 BTN3A3O00478 584 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 ERI3O43414 337 aaKnown RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 AHCYL1O43865 530 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 DNAJA1P31689 397 aaKnown RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 HEPACAMQ14CZ8 416 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 C11orf91Q3C1V1 193 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 Q6ZS52 159 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 KCTD8Q6ZWB6 473 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 TRIM73Q86UV7 250 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 CHDHQ8NE62 594 aaPredicted RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 CNIH3Q8TBE1 160 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 PATE1Q8WXA2 126 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 UBE2FQ969M7 185 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 MAGED4Q96JG8 741 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 MVB12BQ9H7P6 319 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 NT5DC2Q9H857 520 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 DDX31Q9H8H2 851 aaKnown RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 POLR1BQ9H9Y6 1135 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 C2orf42Q9NWW7 574 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 NDUFAF4Q9P032 175 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 C3orf18Q9UK00 162 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 RAB23Q9ULC3 237 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 NDRG2Q9UN36 371 aaKnown RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 PGRMC2O15173 223 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 PDPK1O15530 556 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 PRAMEF10O60809 474 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 UQCRC2P22695 453 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 CLK3P49761 638 aaKnown RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 PCBP4P57723 403 aaKnown RBP14.32□□□□□ -0.12
GPC3-202ENST00000394299 ISL1P61371 349 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 LRRC74AQ0VAA2 488 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 NFATC4Q14934 902 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 NDUFAF5Q5TEU4 345 aa14.32□□□□□ -0.12
GPC3-202ENST00000394299 TRIM40Q6P9F5 258 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms