RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CHN2P52757 468 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 MTPNP58546 118 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 TBPL1P62380 186 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 CHIT1Q13231 466 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 NAE1Q13564 534 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 SELPLGQ14242 412 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 CYP51A1Q16850 503 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 SPANXN4Q5MJ08 99 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 PRAMEF13Q5VWM6 474 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 FRG2Q64ET8 278 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 AMIGO2Q86SJ2 522 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 THOC6Q86W42 341 aaKnown RBP9.71□□□□□ -0.86
VPS53-202ENST00000389040 C17orf64Q86WR6 236 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 PROSER1Q86XN7 944 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 TBC1D19Q8N5T2 526 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 BMPERQ8N8U9 685 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 C19orf47Q8N9M1 422 aaKnown RBP9.71□□□□□ -0.86
VPS53-202ENST00000389040 ABHD11Q8NFV4 315 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 JPH3Q8WXH2 748 aaPredicted RBP9.71□□□□□ -0.86
VPS53-202ENST00000389040 GTF2H4Q92759 462 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 THAP11Q96EK4 314 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 SLC46A1Q96NT5 459 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 IL17FQ96PD4 163 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 FRG2BQ96QU4 278 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 MRPS30Q9NP92 439 aaKnown RBP9.71□□□□□ -0.86
VPS53-202ENST00000389040 AGPAT4Q9NRZ5 378 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 TMEM9Q9P0T7 183 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 ACSL6Q9UKU0 697 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 TMED5Q9Y3A6 229 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 LOXL2Q9Y4K0 774 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 PCDHB3Q9Y5E6 796 aa9.71□□□□□ -0.86
VPS53-202ENST00000389040 CNOT1A5YKK6 2376 aaKnown RBP9.71□□□□□ -0.86
VPS53-202ENST00000389040 SERTM1A2A2V5 107 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 SLC9B1P1A6NJY1 282 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 NPIPB8E9PQR5 432 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PRAMEF4O60810 478 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PRPS2P11908 318 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 FGF5P12034 268 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 NPPBP16860 134 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CXCR2P25025 360 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 GSTM2P28161 218 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 MAPK1P28482 360 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 RBMS1P29558 406 aaKnown RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 IRF8Q02556 426 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 DSG2Q14126 1118 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 C16orf72Q14CZ0 275 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 MAPKAPK3Q16644 382 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 NRF1Q16656 503 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS53-202ENST00000389040 SNAP47Q5SQN1 464 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 MANEAQ5SRI9 462 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 C6orf52Q5T4I8 152 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 DCAF12Q5T6F0 453 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 THEMIS2Q5TEJ8 643 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PRAMEF9Q5VWM5 478 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 LIPJQ5W064 366 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CEACAM20Q6UY09 585 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 FAM9CQ8IZT9 166 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CLHC1Q8NHS4 586 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CMTM7Q96FZ5 175 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 MS4A3Q96HJ5 214 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ZNF597Q96LX8 424 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 SARGQ9BW04 601 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 FAM117AQ9C073 453 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 EHD1Q9H4M9 534 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PIF1Q9H611 641 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 SIDT1Q9NXL6 827 aaKnown RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 VAPAQ9P0L0 249 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 MAGEL2Q9UJ55 1249 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 SERTAD3Q9UJW9 196 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 USP22Q9UPT9 525 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 DLGAP4Q9Y2H0 992 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 OR2A25A4D2G3 310 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 A8MU76 341 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 POLR1CO15160 346 aaPredicted RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 KIF1CO43896 1103 aaKnown RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 UMPSP11172 480 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 FCGR1AP12314 374 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ACPPP15309 386 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PCSK2P16519 638 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 FASP25445 335 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 GRK3P35626 688 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CLDN8P56748 225 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 OR4D2P58180 307 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 PLIN5Q00G26 463 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ZNF33BQ06732 778 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 XKR6Q5GH73 641 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 TCTE1Q5JU00 501 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 YOD1Q5VVQ6 348 aaPredicted RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 ZNF425Q6IV72 752 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 FIGLAQ6QHK4 219 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ST13P4Q8IZP2 240 aaPredicted RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 RCBTB1Q8NDN9 531 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 TRPV3Q8NET8 790 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 OR4K1Q8NGD4 311 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 MED8Q96G25 268 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CNBD2Q96M20 576 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 ZNF578Q96N58 590 aaPredicted RBP9.7□□□□□ -0.86
VPS53-202ENST00000389040 OR52E6Q96RD3 313 aa9.7□□□□□ -0.86
VPS53-202ENST00000389040 CIB1Q99828 191 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms