RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 IFI44LQ53G44 452 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 COX20Q5RI15 118 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 GALNT5Q7Z7M9 940 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 TSPYL5Q86VY4 417 aaPredicted RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 HDDC3Q8N4P3 179 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 TTC29Q8NA56 475 aaPredicted RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ATG16L2Q8NAA4 619 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 RPLP0P6Q8NHW5 317 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 RAB2BQ8WUD1 216 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 TIMM29Q9BSF4 260 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ACAT2Q9BWD1 397 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 RMI1Q9H9A7 625 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 NDRG4Q9ULP0 352 aaKnown RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 PCDHGB1Q9Y5G3 927 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 GMPPBQ9Y5P6 360 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 TMEM229AB2RXF0 380 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 PLPP1O14494 284 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 CAPN5O15484 640 aaPredicted RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 MRPS14O60783 128 aaKnown RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ANGPTL1O95841 491 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ITGA2P17301 1181 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 JUNDP17535 347 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ITIH1P19827 911 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 EEF1A2Q05639 463 aaKnown RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 DCTN2Q13561 401 aaKnown RBP20.54■□□□□ 0.88
TRIM54-202ENST00000380075 CRB2Q5IJ48 1285 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 KIAA1614Q5VZ46 1190 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 GTF2IRD2BQ6EKJ0 949 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 GTF2IRD2Q86UP8 949 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 NODALQ96S42 347 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 PITX2Q99697 317 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 RAB11FIP5Q9BXF6 653 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 SLC6A16Q9GZN6 736 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ADAM29Q9UKF5 820 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ANGPT4Q9Y264 503 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 TPRKBQ9Y3C4 175 aa20.54■□□□□ 0.88
TRIM54-202ENST00000380075 ARAFP10398 606 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 AGXTP21549 392 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 CLK3P49761 638 aaKnown RBP20.53■□□□□ 0.88
TRIM54-202ENST00000380075 MAPK12P53778 367 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 CDK6Q00534 326 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 HEPACAMQ14CZ8 416 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 IRF4Q15306 451 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 IL17RCQ8NAC3 791 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 NLNQ9BYT8 704 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 THSD1Q9NS62 852 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 TAAR2Q9P1P5 351 aa20.53■□□□□ 0.88
TRIM54-202ENST00000380075 ATE1O95260 518 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 HTR1AP08908 422 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 AQP1P29972 269 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 WASP42768 502 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 CLCNKAP51800 687 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 MRPS21P82921 87 aaKnown RBP20.52■□□□□ 0.88
TRIM54-202ENST00000380075 SLC5A12Q1EHB4 618 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 C11orf91Q3C1V1 193 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 ZNF776Q68DI1 518 aaPredicted RBP20.52■□□□□ 0.88
TRIM54-202ENST00000380075 BMP8AQ7Z5Y6 402 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 C2orf73Q8N5S3 287 aaPredicted RBP20.52■□□□□ 0.88
TRIM54-202ENST00000380075 TP53I13Q8NBR0 393 aaPredicted RBP20.52■□□□□ 0.88
TRIM54-202ENST00000380075 SPPL2AQ8TCT8 520 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 GAB3Q8WWW8 586 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 OR5P2Q8WZ92 322 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 MUL1Q969V5 352 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 ZNF717Q9BY31 904 aaPredicted RBP20.52■□□□□ 0.88
TRIM54-202ENST00000380075 MBNL1Q9NR56 388 aaKnown RBP20.52■□□□□ 0.88
TRIM54-202ENST00000380075 TM7SF3Q9NS93 570 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 SCN3BQ9NY72 215 aa20.52■□□□□ 0.88
TRIM54-202ENST00000380075 A0A1W2PPV9 198 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 E9PQ18 207 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 RPS21P63220 83 aaKnown RBP20.52■□□□□ 0.87
TRIM54-202ENST00000380075 IL1RL1Q01638 556 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 LAPTM4AQ15012 233 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 ANKRD53Q8N9V6 530 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 NFKBIDQ8NI38 313 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 GABARAPL3Q9BY60 117 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 LHPPQ9H008 270 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 EPS8L2Q9H6S3 715 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 NEUROD4Q9HD90 331 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 CCNB1IP1Q9NPC3 277 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 C2orf42Q9NWW7 574 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 NDUFAF4Q9P032 175 aa20.52■□□□□ 0.87
TRIM54-202ENST00000380075 A8MVJ9 347 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 KLF8O95600 359 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-202ENST00000380075 TBX6O95947 436 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-202ENST00000380075 CCNA2P20248 432 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 MATN1P21941 496 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 RRM2P31350 389 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 SOAT1P35610 550 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 BSGP35613 385 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 SIM2Q14190 667 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-202ENST00000380075 KIAA1161Q6NSJ0 714 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 RNF130Q86XS8 419 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 BPIFB6Q8NFQ5 453 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 TTLQ8NG68 377 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 GEMIN6Q8WXD5 167 aaKnown RBP20.51■□□□□ 0.87
TRIM54-202ENST00000380075 ERLEC1Q96DZ1 483 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 CHRDQ9H2X0 955 aa20.51■□□□□ 0.87
TRIM54-202ENST00000380075 GPN2Q9H9Y4 310 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-202ENST00000380075 CUEDC1Q9NWM3 386 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-202ENST00000380075 CFAP20Q9Y6A4 193 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms