RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FHL5Q5TD97 284 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 JMJD6Q6NYC1 403 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 GTF2H2CQ6P1K8 395 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 FAHD1Q6P587 224 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ENPP6Q6UWR7 440 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 FAM151BQ6UXP7 276 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PIWIL3Q7Z3Z3 882 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 SLC22A9Q8IVM8 553 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TRAM1L1Q8N609 369 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PCDH20Q8N6Y1 951 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 KYQ8NBH2 561 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 LPCAT1Q8NF37 534 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 BLOC1S5Q8TDH9 187 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TRPC4APQ8TEL6 797 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SCAMP4Q969E2 229 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF566Q969W8 418 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SGF29Q96ES7 293 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 LINGO1Q96FE5 620 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CCDC138Q96M89 665 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NR1H4Q96RI1 486 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 CDRT15Q96T59 188 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PKP4Q99569 1192 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TCF25Q9BQ70 676 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 WASH6PQ9NQA3 447 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ASH1LQ9NR48 2969 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 MBNL1Q9NR56 388 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 MRPL17Q9NRX2 175 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TDP1Q9NUW8 608 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 USE1Q9NZ43 259 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ACTR3BQ9P1U1 418 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CDH7Q9ULB5 785 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PADI4Q9UM07 663 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 BTRCQ9Y297 605 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF510Q9Y2H8 683 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 FADS3Q9Y5Q0 445 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CFAP20Q9Y6A4 193 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 ITPR1Q14643 2758 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TECTAO75443 2155 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CELSR2Q9HCU4 2923 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ARID1BQ8NFD5 2236 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 C16orf96A6NNT2 1141 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 BBIP1A8MTZ0 92 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 LOC730098B7Z3J9 87 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 J3QRE1 110 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TRIM38O00635 465 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PLRG1O43660 514 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 DFNA5O60443 496 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 UGDHO60701 494 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 WBP4O75554 376 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 WDR47O94967 919 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF682O95780 498 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 AGR2O95994 175 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 RBP1P09455 135 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 EBLN1P0CF75 366 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GIMD1P0DJR0 217 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 BCKDHAP12694 445 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HOXB8P17481 243 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 PI3P19957 117 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 IDSP22304 550 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 EPHA2P29317 976 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ELF1P32519 619 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CA8P35219 290 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PGM1P36871 562 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 TGFBR2P37173 567 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 VIPR2P41587 438 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ALDH7A1P49419 539 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TTPAP49638 278 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GSK3BP49841 420 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 STX1BP61266 288 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PSME3P61289 254 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 HGFACQ04756 655 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ILF2Q12905 390 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 LAMB3Q13751 1172 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NFYCQ13952 458 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CYLC2Q14093 348 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 DMC1Q14565 340 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PUM1Q14671 1186 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS54-202ENST00000354504 EIF4HQ15056 248 aaKnown RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 E2F5Q15329 346 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NPTX1Q15818 432 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 GPR33Q49SQ1 333 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 DNAL1Q4LDG9 190 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 AGAP9Q5VTM2 703 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 OR4F3Q6IEY1 312 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 IRGCQ6NXR0 463 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 ZNF793Q6ZN11 406 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PDZD4Q76G19 769 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 GRASPQ7Z6J2 395 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 CYP4Z1Q86W10 505 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 C17orf82Q86X59 251 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 GPR135Q8IZ08 494 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 NRSN1Q8IZ57 195 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 DNAAF3Q8N9W5 541 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 PPFIBP2Q8ND30 876 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CEP70Q8NHQ1 597 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CALML6Q8TD86 181 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 SNX33Q8WV41 574 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 CANT1Q8WVQ1 401 aa2.2□□□□□ -2.06
VPS54-202ENST00000354504 N4BP2L2Q92802 583 aaPredicted RBP2.2□□□□□ -2.06
VPS54-202ENST00000354504 TMIGD2Q96BF3 282 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms