RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OR2A12Q8NGT7 310 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 COX4I2Q96KJ9 171 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 OR51I1Q9H343 314 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 CWH43Q9H720 699 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 RNF121Q9H920 327 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 TMEM138Q9NPI0 162 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 BCORQ6W2J9 1755 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 PRRC2BQ5JSZ5 2229 aaKnown RBP14.29□□□□□ -0.12
COL17A1-201ENST00000353479 ACADVLP49748 655 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 RPS6KA3P51812 740 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 RPS26P62854 115 aaKnown RBP14.29□□□□□ -0.12
COL17A1-201ENST00000353479 RNF220Q5VTB9 566 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 OR52E8Q6IFG1 317 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 CROCCP3Q8IVE0 287 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 GORASP1Q9BQQ3 440 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 MAU2Q9Y6X3 613 aa14.29□□□□□ -0.12
COL17A1-201ENST00000353479 SHC2P98077 582 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 PTCRAQ6ISU1 281 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 PTGES2Q9H7Z7 377 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 PCDHGB7Q9Y5F8 929 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CCDC182A6NF36 153 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 NPIPA5E9PKD4 350 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 ATXN1LP0C7T5 689 aaKnown RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 PPP3R1P63098 170 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 PPP2R2BQ00005 443 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 MBTPS1Q14703 1052 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 ATG9BQ674R7 924 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 RSPO2Q6UXX9 243 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 ERMP1Q7Z2K6 904 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 GALNT12Q8IXK2 581 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 BBS10Q8TAM1 723 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 HSPA12BQ96MM6 686 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 DEFB126Q9BYW3 111 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 NPIPA1Q9UND3 350 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CA5BQ9Y2D0 317 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SMSP52788 366 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 IL18Q14116 193 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SYT16Q17RD7 645 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 GRHL2Q6ISB3 625 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 LINC00471Q8N535 108 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 UFD1Q92890 307 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CD180Q99467 661 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CXorf21Q9HAI6 301 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 ARNT2Q9HBZ2 717 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 MARF1Q9Y4F3 1742 aaKnown RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 H3BNX3 289 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SCAMP2O15127 329 aaKnown RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 AHSA1O95433 338 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 IFI30P13284 250 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 DRD2P14416 443 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CBLP22681 906 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CD6P30203 668 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CRTC2Q53ET0 693 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 LYSMD4Q5XG99 296 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 RNF111Q6ZNA4 994 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 CHERPQ8IWX8 916 aaKnown RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 PGBD5Q8N414 524 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 NKX1-2Q9UD57 310 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 GPC6Q9Y625 555 aaPredicted RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 DOCK2Q92608 1830 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 C1SP09871 688 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 MRPS21P82921 87 aaKnown RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SNTA1Q13424 505 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 ZNF846Q147U1 533 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 GRM7Q14831 915 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 MYBPC3Q14896 1274 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SLC14A2Q15849 920 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SPATS1Q496A3 300 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 LETMD1Q6P1Q0 360 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 DAZLQ92904 295 aaKnown RBP14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SEC61A2Q9H9S3 476 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 MARK1Q9P0L2 795 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 ACSL6Q9UKU0 697 aa14.28□□□□□ -0.12
COL17A1-201ENST00000353479 SCO2O43819 266 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 TRIM3O75382 744 aaPredicted RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 CLDN8P56748 225 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 CSTF1Q05048 431 aaKnown RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 COMMD6Q7Z4G1 85 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 CHCHD4Q8N4Q1 142 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 ARAP2Q8WZ64 1704 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 APIPQ96GX9 242 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 ZFYVE21Q9BQ24 234 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 SPATA9Q9BWV2 254 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 BHLHE41Q9C0J9 482 aaPredicted RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 POLR2J2Q9GZM3 115 aaKnown RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 PREBQ9HCU5 417 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 TM9SF3Q9HD45 589 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 CENPMQ9NSP4 180 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 TBX21Q9UL17 535 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 SPIN1Q9Y657 262 aaPredicted RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 EEDO75530 441 aaKnown RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 PORP16435 677 aaPredicted RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 CCR7P32248 378 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 PTPRRQ15256 657 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 TBC1D25Q3MII6 688 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 C6orf120Q7Z4R8 191 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 DPH2Q9BQC3 489 aaPredicted RBP14.27□□□□□ -0.12
COL17A1-201ENST00000353479 G6PC3Q9BUM1 346 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 ASPNQ9BXN1 380 aa14.27□□□□□ -0.12
COL17A1-201ENST00000353479 PELI2Q9HAT8 420 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms