RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GABRB3P28472 473 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 HNMTP50135 292 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 CCZ1BP86790 482 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 CCZ1P86791 482 aaPredicted RBP13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 CDKL1Q00532 357 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 TBL3Q12788 808 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 BMPR2Q13873 1038 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 EFTUD2Q15029 972 aaKnown RBP eCLIP13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM45BPQ6NSW5 357 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 ZNF585AQ6P3V2 769 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 CCDC137Q6PK04 289 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 SBSNQ6UWP8 590 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 TRILQ7L0X0 811 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 KLHDC8AQ8IYD2 350 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM109AQ8N4B1 249 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 MORN4Q8NDC4 146 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 OR5L2Q8NGL0 311 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 OR5M9Q8NGP3 310 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 OR8K3Q8NH51 312 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 FAM45AQ8TCE6 357 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 SARAFQ96BY9 339 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 RASL10BQ96S79 203 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 B4GALT7Q9UBV7 327 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 ACAD8Q9UKU7 415 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 L3MBTL1Q9Y468 752 aa13.71□□□□□ -0.21
CCDC88B-201ENST00000301897 C4orf51C9J302 202 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 ERI3O43414 337 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 HCN1O60741 890 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 P04436 131 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 IFNA16P05015 189 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 GLI4P10075 376 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 GABRA1P14867 456 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 KLK2P20151 261 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 SOX3P41225 446 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 MAN2A2P49641 1150 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 RUNX2Q13950 521 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 CYP1B1Q16678 543 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 HYAL4Q2M3T9 481 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 WLSQ5T9L3 541 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 OPN5Q6U736 354 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 ARSKQ6UWY0 536 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 TMIGD1Q6UXZ0 262 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 KRT78Q8N1N4 520 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 NKAPQ8N5F7 415 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 OR14A16Q8NHC5 309 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 KIAA1191Q96A73 305 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 MS4A6EQ96DS6 147 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 LRRC46Q96FV0 321 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 CERS2Q96G23 380 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 PBKQ96KB5 322 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 CAPS2Q9BXY5 557 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 POLDIP3Q9BY77 421 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 SACM1LQ9NTJ5 587 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 CCM2LQ9NUG4 571 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 RYDENQ9NUL5 291 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 ST6GALNAC2Q9UJ37 374 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC22A14Q9Y267 594 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 FAM215AQ9Y5M1 114 aa13.7□□□□□ -0.22
CCDC88B-201ENST00000301897 EML6Q6ZMW3 1958 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 PINLYPA6NC86 204 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 LRIT2A6NDA9 550 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 TMEM200CA6NKL6 621 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 WWP2O00308 870 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 PRKNO60260 465 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 CTNSO60931 367 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 CLEC3AO75596 197 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 C1GALT1C1LP0DN25 315 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 FOSL1P15407 271 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 DNASE1P24855 282 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 HK2P52789 917 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 TGM3Q08188 693 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 SERTAD2Q14140 314 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 SLC10A1Q14973 349 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 PPP1R3AQ16821 1122 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 XKR6Q5GH73 641 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 C1orf185Q5T7R7 199 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 RIPPLY2Q5TAB7 128 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 RNASEH2BQ5TBB1 312 aaKnown RBP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 TRIM40Q6P9F5 258 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 FAM47EQ6ZV65 393 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 RASGEF1CQ8N431 466 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 TMEM251Q8N6I4 163 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 OR2L5Q8NG80 312 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 CCT6BQ92526 530 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 RMND5BQ96G75 393 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 SERINC2Q96SA4 455 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 EGFL8Q99944 293 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 AICDAQ9GZX7 198 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 LDAHQ9H6V9 325 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 NT5DC2Q9H857 520 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 COPS7BQ9H9Q2 264 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 PPANQ9NQ55 473 aaKnown RBP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 VTI1BQ9UEU0 232 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 PCDHGB3Q9Y5G1 929 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 CLDN16Q9Y5I7 305 aa13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 HRNRQ86YZ3 2850 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-201ENST00000301897 A0A0G2JNJ9 132 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 CTAGE15A4D2H0 777 aa13.68□□□□□ -0.22
CCDC88B-201ENST00000301897 ANKDD1BA6NHY2 528 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms