RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 STBD1O95210 358 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 BCKDHAP12694 445 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ENGP17813 658 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 GSK3BP49841 420 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 SCGB2A2Q13296 93 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 C2orf76Q3KRA6 126 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 VARS2Q5ST30 1063 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 BEST3Q8N1M1 668 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 GMLQ99445 158 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 UNKLQ9H9P5 680 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 MRPS30Q9NP92 439 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 GFOD1Q9NXC2 390 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 SCML2Q9UQR0 700 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 MRPS23Q9Y3D9 190 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 NEMP2A6NFY4 417 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 CKMT2P17540 419 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ALDH3B1P43353 468 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 MAP2K4P45985 399 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TRAM1Q15629 374 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PIGGQ5H8A4 983 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF529Q6P280 563 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 UBQLNLQ8IYU4 475 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 NEIL3Q8TAT5 605 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 HERC2P3Q9BVR0 1158 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TSSK6Q9BXA6 273 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ASF1BQ9NVP2 202 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 HEATR5BQ9P2D3 2071 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 SCN9AQ15858 1988 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PIRO00625 290 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 IFNA10P01566 189 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 NUDT7P0C024 238 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 RPS14P62263 151 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PDZD9Q8IXQ8 264 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 OR7D4Q8NG98 312 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 KIAA1191Q96A73 305 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ABCG4Q9H172 646 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TMEM45AQ9NWC5 275 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TMEM248Q9NWD8 314 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 EOMESO95936 686 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 IFNA5P01569 189 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 OR1D2P34982 312 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 C12orf40Q86WS4 652 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 NAT16Q8N8M0 369 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TSPEARQ8WU66 669 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TSGA13Q96PP4 275 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 OR14A2Q96R54 314 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TRMT61BQ9BVS5 477 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 TPT1P8Q9HAU6 139 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 FZD4Q9ULV1 537 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 EEDO75530 441 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 DNASE1P24855 282 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 NKX2-5P52952 324 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PLA2G16P53816 162 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 OLIG2Q13516 323 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ADAMTS6Q9UKP5 1117 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 YARS2Q9Y2Z4 477 aaKnown RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 LCHNA4D1U4 455 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 HTR3EA5X5Y0 456 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 OR51F1A6NGY5 319 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 HTRA2O43464 458 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 OR2B3O76000 313 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RCBTB2O95199 551 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 TIGD5Q53EQ6 642 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ACTR6Q9GZN1 396 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 TLX2O43763 284 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 SLC35E2BP0CK96 405 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 PORP16435 677 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 PRPS1L1P21108 318 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CARD16Q5EG05 197 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 B3GNT9Q6UX72 402 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 LINC00471Q8N535 108 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 BIRC8Q96P09 236 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GLS2Q9UI32 602 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 LTBP3Q9NS15 1303 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CASC3O15234 703 aaKnown RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CXCR1P25024 350 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 UGT2B10P36537 528 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 LEPRP48357 1165 aaKnown RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CHST9Q7L1S5 443 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 PPIL3Q9H2H8 161 aaKnown RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 FER1L5A0AVI2 2057 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ENPP3O14638 875 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 SOX14O95416 240 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CH25HO95992 272 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ADH1AP07327 375 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GHRHRQ02643 423 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CGB2Q6NT52 195 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CD180Q99467 661 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 HEPHQ9BQS7 1158 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 BTBD1Q9H0C5 482 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 WDR6Q9NNW5 1121 aaKnown RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RBPJLQ9UBG7 517 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ANKRD31Q8N7Z5 1873 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GKN3PP0CG01 181 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 EVI2BP34910 448 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ABRAXAS2Q15018 415 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 DUOXA1Q1HG43 343 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CDHR3Q6ZTQ4 885 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 C7orf61Q8IZ16 206 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GOLM1Q8NBJ4 401 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms