RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ALOX12P18054 663 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 FRKP42685 505 aaPredicted RBP13.38□□□□□ -0.27
SS18-201ENST00000269137 GFERP55789 205 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 AP2B1P63010 937 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 LCN8Q6JVE9 175 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 FAM92BQ6ZTR7 304 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 IFNEQ86WN2 208 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 CALHM3Q86XJ0 350 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 GATAD2AQ86YP4 633 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 MCATQ8IVS2 390 aaKnown RBP13.38□□□□□ -0.27
SS18-201ENST00000269137 HIPK4Q8NE63 616 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 CIDECQ96AQ7 238 aaPredicted RBP13.38□□□□□ -0.27
SS18-201ENST00000269137 AHCYL2Q96HN2 611 aaKnown RBP13.38□□□□□ -0.27
SS18-201ENST00000269137 TGM7Q96PF1 710 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 SERINC2Q96SA4 455 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 CCDC3Q9BQI4 270 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 TRIM15Q9C019 465 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 FSCN3Q9NQT6 498 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 ZNF282Q9UDV7 671 aaPredicted RBP13.38□□□□□ -0.27
SS18-201ENST00000269137 VPS4AQ9UN37 437 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 PCDHGB4Q9UN71 923 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 ATG4BQ9Y4P1 393 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 SNX13Q9Y5W8 968 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 SLC22A7Q9Y694 548 aa13.38□□□□□ -0.27
SS18-201ENST00000269137 SCN3AQ9NY46 2000 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 A0A1W2PR48 441 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 A0A1W2PRB8 838 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 C1orf226A1L170 272 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 EVPLLA8MZ36 301 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 H0Y3Z8 333 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 CLIC1O00299 241 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 ARHGAP33O14559 1287 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 NVLO15381 856 aaKnown RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 PROM1O43490 865 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 KIF1CO43896 1103 aaKnown RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 CER1O95813 267 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 EIF2S1P05198 315 aaKnown RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 C8BP07358 591 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 PPIBP23284 216 aaKnown RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 ALDH9A1P49189 494 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 ERFP50548 548 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 CCT8P50990 548 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 PCBP4P57723 403 aaKnown RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 VSX2P58304 361 aaPredicted RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 HBA1P69905 142 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 AASDHQ4L235 1098 aaPredicted RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 TRIM61Q5EBN2 209 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 NKAIN2Q5VXU1 208 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 ZFP1Q6P2D0 407 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 PLXDC1Q8IUK5 500 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 GOLM1Q8NBJ4 401 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 TNIP2Q8NFZ5 429 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 OR4A15Q8NGL6 344 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 OR10A6Q8NH74 314 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 AURKBQ96GD4 344 aaPredicted RBP13.37□□□□□ -0.27
SS18-201ENST00000269137 LOXL4Q96JB6 756 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 ZNF285Q96NJ3 590 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 TAS2R9Q9NYW1 312 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 SEMA5BQ9P283 1151 aa13.37□□□□□ -0.27
SS18-201ENST00000269137 TCRBV3S1A0A5B6 114 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 AQP12BA6NM10 295 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PATE3B3GLJ2 98 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ARPC2O15144 300 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PDPK1O15530 556 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 HCRTR1O43613 425 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 B3GALT2O43825 422 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ZBTB11O95625 1053 aaPredicted RBP13.36□□□□□ -0.27
SS18-201ENST00000269137 C6orf47O95873 294 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 C9P02748 559 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 SYPP08247 313 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 GPX2P18283 190 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 EFNA1P20827 205 aaPredicted RBP13.36□□□□□ -0.27
SS18-201ENST00000269137 CD1CP29017 333 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 GABRA4P48169 554 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 GZMMP51124 257 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 OR4D2P58180 307 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 RHDQ02161 417 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ABHD18Q0P651 414 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 NR0B2Q15466 257 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PRTGQ2VWP7 1150 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 DGLUCYQ7Z3D6 616 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 GPR155Q7Z3F1 870 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PROSER1Q86XN7 944 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 AQP12AQ8IXF9 295 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ARHGEF39Q8N4T4 335 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 OR2T12Q8NG77 320 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ZFP90Q8TF47 636 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PYDC1Q8WXC3 89 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 OR5P2Q8WZ92 322 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 DUS3LQ96G46 650 aaKnown RBP13.36□□□□□ -0.27
SS18-201ENST00000269137 LRGUKQ96M69 825 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 TPT1P8Q9HAU6 139 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PRDM9Q9NQV7 894 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ACSS1Q9NUB1 689 aaPredicted RBP13.36□□□□□ -0.27
SS18-201ENST00000269137 KCMF1Q9P0J7 381 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 EGFL7Q9UHF1 273 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 PHF11Q9UIL8 331 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 ADAMTS9Q9P2N4 1935 aa13.36□□□□□ -0.27
SS18-201ENST00000269137 MN1Q10571 1320 aaPredicted RBP13.36□□□□□ -0.27
SS18-201ENST00000269137 IGHV5-51A0A0C4DH38 117 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms