RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MAPKAP1Q9BPZ7 522 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CHID1Q9BWS9 393 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CXorf36Q9H7Y0 433 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 NT5DC2Q9H857 520 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 MAGED1Q9Y5V3 778 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 A0A0A6YYD5 115 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 C2orf74A8MZ97 194 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CHI3L1P36222 383 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 IST1P53990 364 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 R3HCC1LQ7Z5L2 792 aaKnown RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 OR4N5Q8IXE1 308 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 FAM47BQ8NA70 645 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 BHLHE41Q9C0J9 482 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 DDX31Q9H8H2 851 aaKnown RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 ATAD3AQ9NVI7 634 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 MAGEL2Q9UJ55 1249 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 OR2A25A4D2G3 310 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 H0YGG7 62 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 RNASET2O00584 256 aaKnown RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 TOR1BO14657 336 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 GPR37L1O60883 481 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CCNDBP1O95273 360 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 RPS9P46781 194 aaKnown RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 C21orf59P57076 290 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 VSX2P58304 361 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 NXPH1P58417 271 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 ARF3P61204 181 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 SLC9A5Q14940 896 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 HEPACAMQ14CZ8 416 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 AASDHQ4L235 1098 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 OGFRL1Q5TC84 451 aaPredicted RBP15.66■□□□□ 0.1
USP4-201ENST00000265560 ASPGQ86U10 573 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 PTOV1Q86YD1 416 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.66■□□□□ 0.1
USP4-201ENST00000265560 AVL9Q8NBF6 648 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 ZFP90Q8TF47 636 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 SIRT5Q9NXA8 310 aa15.66■□□□□ 0.1
USP4-201ENST00000265560 CELSR3Q9NYQ7 3312 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 AHRP35869 848 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 ID2Q02363 134 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 DUSP2Q05923 314 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 PRR23BQ6ZRT6 265 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 CALHM3Q86XJ0 350 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 GATAD2AQ86YP4 633 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 KCNC2Q96PR1 638 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 SLC38A3Q99624 504 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 TRIM4Q9C037 500 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 TAS2R9Q9NYW1 312 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 DLGAP2Q9P1A6 1054 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 BTNL2Q9UIR0 455 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 OR5K3A6NET4 321 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 SLC9B1P1A6NJY1 282 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 OPN1SWP03999 348 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 CDH3P22223 829 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 CDK9P50750 372 aaKnown RBP15.65■□□□□ 0.1
USP4-201ENST00000265560 GFERP55789 205 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 C21orf58P58505 322 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 RGNQ15493 299 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 ARMC6Q6NXE6 501 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 CAMKMTQ7Z624 323 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 VTCN1Q7Z7D3 282 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 PROSER1Q86XN7 944 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 PDSS2Q86YH6 399 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 CCDC116Q8IYX3 515 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 TBC1D19Q8N5T2 526 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 TTLQ8NG68 377 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 OR5T3Q8NGG3 340 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 STARD8Q92502 1023 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 VPS50Q96JG6 964 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 MAP3K3Q99759 626 aa15.65■□□□□ 0.1
USP4-201ENST00000265560 OR5K4A6NMS3 321 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 NOBOXO60393 691 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 DIRAS1O95057 198 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 PRKAG1P54619 331 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 POLE2P56282 527 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 TNFAIP8L2Q6P589 184 aaPredicted RBP15.64■□□□□ 0.09
USP4-201ENST00000265560 OLIG3Q7RTU3 272 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 EFHD1Q9BUP0 239 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 PCDHGB5Q9Y5G0 923 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 CACNA1HO95180 2353 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 UBXN7O94888 489 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 AIFM1O95831 613 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 SLC35G6P0C7Q6 338 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 RPS15AP62244 130 aaKnown RBP15.64■□□□□ 0.09
USP4-201ENST00000265560 ZXDAP98168 799 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 ABHD18Q0P651 414 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 LPAL2Q16609 132 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 AMZ1Q400G9 498 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 SNAP47Q5SQN1 464 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 ZZZ3Q8IYH5 903 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 ADCY4Q8NFM4 1077 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 OR2I1PQ8NGU4 316 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 RAB8BQ92930 207 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 COL26A1Q96A83 441 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 YIPF4Q9BSR8 244 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 ANKMY1Q9P2S6 941 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 PADI4Q9UM07 663 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 ASB4Q9Y574 426 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 U3KQV3 271 aa15.64■□□□□ 0.09
USP4-201ENST00000265560 TP53BP1Q12888 1972 aaPredicted RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms