RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZNF782Q6ZMW2 699 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 MSANTD1Q6ZTZ1 278 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GID4Q8IVV7 300 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 PSD4Q8NDX1 1056 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 OR4K14Q8NGD5 310 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 OR5T3Q8NGG3 340 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TMEM40Q8WWA1 233 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 PNO1Q9NRX1 252 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 PLAGL1Q9UM63 463 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 C5orf51A6NDU8 294 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SLC1A7O00341 560 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TNFP01375 233 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ZNF20P17024 532 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 RHCEP18577 417 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 CD9P21926 228 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 STOMP27105 288 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 MAPK3P27361 379 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 CRISP1P54107 249 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SPHARQ15513 63 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 EXOC3L2Q2M3D2 409 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SLC35F1Q5T1Q4 408 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TSPYL5Q86VY4 417 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 PAQR7Q86WK9 346 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 CCDC116Q8IYX3 515 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 C7orf61Q8IZ16 206 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 OR51G2Q8NGK0 314 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 HMGB4Q8WW32 186 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 RAB7BQ96AH8 199 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SMG9Q9H0W8 520 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 SLC6A15Q9H2J7 730 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SPHK2Q9NRA0 654 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 IGSF5Q9NSI5 407 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TMEM45AQ9NWC5 275 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TAS2R10Q9NYW0 307 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ZNF451Q9Y4E5 1061 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 HSPB11Q9Y547 144 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 PCDHGA7Q9Y5G6 932 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 MYO18AQ92614 2054 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 FLRT2O43155 660 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 PCDHGA12O60330 932 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 KAT7O95251 611 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 CSF2P04141 144 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GSTT2P0CG29 244 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TCEA1P23193 301 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 GSTM2P28161 218 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SHMT2P34897 504 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 HTR6P50406 440 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 IST1P53990 364 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ERVPABLB-1P60509 514 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ERN2Q76MJ5 926 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 IQCF2Q8IXL9 164 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 NRSN1Q8IZ57 195 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ANKRD60Q9BZ19 345 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 WDR6Q9NNW5 1121 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 MAU2Q9Y6X3 613 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 INMT-MINDY4F8WBC2 141 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 AURKAO14965 403 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 CD47Q08722 323 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 RCAN2Q14206 197 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 CLCA4Q14CN2 919 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 PLCZ1Q86YW0 608 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 PNLDC1Q8NA58 520 aaKnown RBP10.33□□□□□ -0.76
CD44-201ENST00000263398 INO80EQ8NBZ0 244 aaPredicted RBP10.33□□□□□ -0.76
CD44-201ENST00000263398 S100A16Q96FQ6 103 aaKnown RBP10.33□□□□□ -0.76
CD44-201ENST00000263398 SORT1Q99523 831 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 FUNDC2Q9BWH2 189 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 TLR9Q9NR96 1032 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 ERVK-11Q9UQG0 969 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 SMIM30A4D0T7 59 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 ZNF726A6NNF4 738 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 A8MUA0 341 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 B4DGG1 531 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 PSMD9O00233 223 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 TFPTP0C1Z6 253 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 IQCF3P0C7M6 154 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 OR12D1P0DN82 309 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 ALPPL2P10696 532 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 EPCAMP16422 314 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 HRH2P25021 359 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 CTSOP43234 321 aaPredicted RBP10.33□□□□□ -0.76
CD44-201ENST00000263398 FAM214AQ32MH5 1076 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 SLC36A3Q495N2 470 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 CYP27C1Q4G0S4 372 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 NEIL3Q8TAT5 605 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 SETD7Q8WTS6 366 aaKnown RBP10.33□□□□□ -0.76
CD44-201ENST00000263398 GSTO2Q9H4Y5 243 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 ACTL8Q9H568 366 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 SLCO3A1Q9UIG8 710 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 NENFQ9UMX5 172 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 BACE2Q9Y5Z0 518 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 A6NHS1 94 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 MEIS3P2A8K0S8 358 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 ASGR2P07307 311 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 IL4RP24394 825 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 TBPL1P62380 186 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 NFATC3Q12968 1075 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 SEC23BQ15437 767 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 ZNF181Q2M3W8 571 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 LIPKQ5VXJ0 399 aa10.33□□□□□ -0.76
CD44-201ENST00000263398 EIF5AL1Q6IS14 154 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms