RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 FBXL8Q96CD0 374 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 TOR3AQ9H497 397 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 LIN28AQ9H9Z2 209 aaKnown RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 C1orf226A1L170 272 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 DRD2P14416 443 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 AGTR2P50052 363 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 CSTF1Q05048 431 aaKnown RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 ZNF33BQ06732 778 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ATG9BQ674R7 924 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 GLT8D1Q68CQ7 371 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 PCDHB14Q9Y5E9 798 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 E7EQ34 232 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 CLIC3O95833 236 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 FHP07954 510 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 C1GALT1C1LP0DN25 315 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 SLC10A2Q12908 348 aaPredicted RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 C6orf136Q5SQH8 315 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ZSWIM9Q86XI8 627 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 TMIEQ8NEW7 156 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 SMARCD2Q92925 531 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 SLC2A13Q96QE2 648 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 GMLQ99445 158 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ABCD2Q9UBJ2 740 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 RABL2AQ9UBK7 228 aaPredicted RBP18.43■□□□□ 0.54
UPF1-201ENST00000262803 RABL2BQ9UNT1 228 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 INMTO95050 263 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 OR2B6P58173 313 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 ARL9Q6T311 187 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 TICAM1Q8IUC6 712 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 GAL3ST3Q96A11 431 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 LAMP5Q9UJQ1 280 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 PCDHGA3Q9Y5H0 932 aa18.43■□□□□ 0.54
UPF1-201ENST00000262803 A0A0D9SEW6 157 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 RHOP08100 348 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 SIX1Q15475 284 aaPredicted RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 SLC15A3Q8IY34 581 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 FTMTQ8N4E7 242 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 MTMR10Q9NXD2 777 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 GPR34Q9UPC5 381 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 PHYHO14832 338 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 ERCC1P07992 297 aaPredicted RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 HOXD8P13378 290 aaPredicted RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 RNH1P13489 461 aaKnown RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 UGT2B10P36537 528 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 ABRAXAS2Q15018 415 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 UPP1Q16831 310 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 MFSD2AQ8NA29 543 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 DEFB126Q9BYW3 111 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 TCRBV21S2A2A0A5A6 115 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 EMC8O43402 210 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 MT-ND2P03891 347 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 PSKH1P11801 424 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 LEPRP48357 1165 aaKnown RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 TECRLQ5HYJ1 363 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 TIGD4Q8IY51 512 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.42■□□□□ 0.54
UPF1-201ENST00000262803 THAP6Q8TBB0 222 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 TMEM203Q969S6 136 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 S100A16Q96FQ6 103 aaKnown RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.42■□□□□ 0.542e-6■□□□□ 10.6
UPF1-201ENST00000262803 SCP2D1Q9UJQ7 156 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 NPIPA2E9PIF3 369 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 NPIPA3F8WFD2 350 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 FAAHO00519 579 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 SLC19A2O60779 497 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 GPR37L1O60883 481 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 ARHGEF15O94989 841 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 SNAI1O95863 264 aaPredicted RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 CCINQ13939 588 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 GAS6Q14393 721 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 TSSK6Q9BXA6 273 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 BAZ2AQ9UIF9 1905 aaKnown RBP18.42■□□□□ 0.54
UPF1-201ENST00000262803 E2F3O00716 465 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 CD63P08962 238 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 ARSFP54793 590 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 OR52E8Q6IFG1 317 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 NANOGP8Q6NSW7 305 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 ZNF773Q6PK81 442 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 MAMDC4Q6UXC1 1216 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 JAGN1Q8N5M9 183 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 NANOGQ9H9S0 305 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 TMEM9Q9P0T7 183 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 SLC7A11Q9UPY5 501 aa18.42■□□□□ 0.54
UPF1-201ENST00000262803 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 IL3P08700 152 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 PET100P0DJ07 73 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 PGCP20142 388 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 C5AR1P21730 350 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 GNG2P59768 71 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 NCEH1Q6PIU2 408 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 SLC7A6OSQ96CW6 309 aaPredicted RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 HOXD1Q9GZZ0 328 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 OR51B5Q9H339 312 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 METTL8Q9H825 291 aaKnown RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 BRD7Q9NPI1 651 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 CFAP20Q9Y6A4 193 aaKnown RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 A0A1W2PPW3 197 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 FTCDNL1E5RQL4 147 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 RNGTTO60942 597 aaKnown RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms