RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PLA2G15Q8NCC3 412 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 ATL1Q8WXF7 558 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 CNPPD1Q9BV87 410 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 KCNK12Q9HB15 430 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 PCDHGB1Q9Y5G3 927 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 PCDHGA2Q9Y5H1 932 aa20.36■□□□□ 0.85
TRIM28-201ENST00000253024 H7BY64 318 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 ADAMDEC1O15204 470 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 AQP9O43315 295 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 OR10H3O60404 316 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 LAG3P18627 525 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 SERPINB1P30740 379 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 PCGF2P35227 344 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 DAB2P98082 770 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 MICAQ29983 383 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 METTL2BQ6P1Q9 378 aaKnown RBP20.35■□□□□ 0.85
TRIM28-201ENST00000253024 GPR155Q7Z3F1 870 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 ABHD8Q96I13 439 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 PRAP1Q96NZ9 151 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 PPIL1Q9Y3C6 166 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 EPCAMP16422 314 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 IL1RNP18510 177 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 LIM2P55344 173 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 SPIN4Q56A73 249 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF805Q5CZA5 627 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 CHCHD4Q8N4Q1 142 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 HORMAD2Q8N7B1 307 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 OR56A3Q8NH54 315 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 RHOXF1Q8NHV9 184 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 DOK4Q8TEW6 326 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 MRGPRX3Q96LB0 322 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 EPYCQ99645 322 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 NMNAT1Q9HAN9 279 aaPredicted RBP20.35■□□□□ 0.85
TRIM28-201ENST00000253024 GPBP1L1Q9HC44 474 aaPredicted RBP20.35■□□□□ 0.85
TRIM28-201ENST00000253024 ACER3Q9NUN7 267 aa20.35■□□□□ 0.85
TRIM28-201ENST00000253024 TNFRSF21O75509 655 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 KLHL18O94889 574 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 CDK1P06493 297 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 NR4A2P43354 598 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 RNF144AP50876 292 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 GALNT13Q8IUC8 556 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 S100ZQ8WXG8 99 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 JPH3Q8WXH2 748 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 QRSL1Q9H0R6 528 aaKnown RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 XKR8Q9H6D3 395 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 PALMDQ9NP74 551 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 CCNB1IP1Q9NPC3 277 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 C1GALT1Q9NS00 363 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 OSGIN1Q9UJX0 560 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 A6NL46 340 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 C5orf58C9J3I9 102 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 PRLHRP49683 370 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 MANFP55145 182 aaKnown RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 C10orf62Q5T681 223 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 NCCRP1Q6ZVX7 275 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF547Q8IVP9 402 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 GPR65Q8IYL9 337 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 SLC34A3Q8N130 599 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 OSGEPL1Q9H4B0 414 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 TAS2R9Q9NYW1 312 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 TAAR2Q9P1P5 351 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 TRPC4Q9UBN4 977 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 F5P12259 2224 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 SLC16A5O15375 505 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 ZW10O43264 779 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 KIAA0513O60268 411 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 C1GALT1C1LP0DN25 315 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 CHMP24386 653 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 PIK3CBP42338 1070 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 PIN1Q13526 163 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 PUM1Q14671 1186 aaKnown RBP eCLIP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 SEC23BQ15437 767 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF750Q32MQ0 723 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 RNF165Q6ZSG1 346 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 MMAAQ8IVH4 418 aaKnown RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 CELF2-AS1Q8N7Q2 184 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 XAGE5Q8WWM1 108 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 SLC5A11Q8WWX8 675 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF689Q96CS4 500 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-201ENST00000253024 VMP1Q96GC9 406 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 CDADC1Q9BWV3 514 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 BTNL2Q9UIR0 455 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 MOSPD1Q9UJG1 213 aa20.34■□□□□ 0.85
TRIM28-201ENST00000253024 PRRT4C9JH25 899 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 CXCR4P61073 352 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 CDKL4Q5MAI5 379 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 LYSMD2Q8IV50 215 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 MYDGFQ969H8 173 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 COQ8BQ96D53 544 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 ZBP1Q9H171 429 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 SLC23A2Q9UGH3 650 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 IFT52Q9Y366 437 aa20.33■□□□□ 0.85
TRIM28-201ENST00000253024 OTOL1A6NHN0 477 aaPredicted RBP20.33■□□□□ 0.84
TRIM28-201ENST00000253024 FFAR1O14842 300 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 ENTPD6O75354 484 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 ARHGEF15O94989 841 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 ZNF30P17039 623 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 IRS1P35568 1242 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 OPRD1P41143 372 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 FNDC3BQ53EP0 1204 aaKnown RBP20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms