RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SHISA6Q6ZSJ9 500 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 NXPE1Q8N323 547 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PNLDC1Q8NA58 520 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SPRYD4Q8WW59 207 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 GCDHQ92947 438 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SCAMP4Q969E2 229 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MENTQ9BUN1 341 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PARPBPQ9NWS1 579 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 A0A0D9SEW6 157 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1W2PPH5 198 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TRABD2BA6NFA1 517 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TRIM64BA6NI03 449 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF879B4DU55 563 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PAPSS2O95340 614 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 DDCP20711 480 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MAZP56270 477 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SLC10A7Q0GE19 358 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 UBAP2LQ14157 1087 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 DEFB134Q4QY38 66 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 APCDD1Q8J025 514 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 DAW1Q8N136 415 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 JOSD2Q8TAC2 188 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 GORASP1Q9BQQ3 440 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 C7orf50Q9BRJ6 194 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ENKD1Q9H0I2 346 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SOX17Q9H6I2 414 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 UTS2RQ9UKP6 389 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 RRP15Q9Y3B9 282 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TRBV11-1A0A0K0K1C0 115 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PMS2P1A4D2B8 440 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 RIIAD1A6NNX1 92 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 H7BY64 318 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PTGESO14684 152 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SRCP12931 536 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PGCP20142 388 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ITGB8P26012 769 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SLC15A1P46059 708 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SPINT3P49223 89 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CSNK2BP67870 215 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 IRF4Q15306 451 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 LRRC36Q1X8D7 754 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ASB18Q6ZVZ8 466 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF550Q7Z398 422 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SLC46A3Q7Z3Q1 461 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 OR11L1Q8NGX0 322 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 S100ZQ8WXG8 99 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF597Q96LX8 424 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PRAP1Q96NZ9 151 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TSSK3Q96PN8 268 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PAFAH2Q99487 392 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 IPPKQ9H8X2 491 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PLAGL1Q9UM63 463 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 DOCK9Q9BZ29 2069 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 TRIM64CA6NLI5 447 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 HOXC11O43248 304 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 NARSO43776 548 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PRAMEF12O95522 483 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 DDAH2O95865 285 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CD2P06729 351 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ITIH1P19827 911 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ATP6V1B2P21281 511 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 OR1D5P58170 312 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SLC10A1Q14973 349 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 OLFML2AQ68BL7 652 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PNCKQ6P2M8 343 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 IZUMO2Q6UXV1 221 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CXXC5Q7LFL8 322 aaKnown RBP4.83□□□□□ -1.64
SCN1A-218ENST00000640036 ADIPOR2Q86V24 386 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 SPAG16Q8N0X2 631 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 METTL25Q8N6Q8 603 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 BCORP1Q8N888 145 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 CDKN2AIPNLQ96HQ2 116 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 MRGPRX1Q96LB2 322 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PHF12Q96QT6 1004 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 FCRL5Q96RD9 977 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 OR6C2Q9NZP2 312 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 PCDHGA10Q9Y5H3 936 aa4.83□□□□□ -1.64
SCN1A-218ENST00000640036 THADAQ6YHU6 1953 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C2CD4BA6NLJ0 364 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 E7ENX8 843 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 OR10H3O60404 316 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 IL12AP29459 219 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 PDHA2P29803 388 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 RAD52P43351 418 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TAP2Q03519 686 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GTF2H2Q13888 395 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 FASTKQ14296 549 aaKnown RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SPIN4Q56A73 249 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 N4BP2L1Q5TBK1 243 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-218ENST00000640036 GTF2H2CQ6P1K8 395 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 DEF8Q6ZN54 512 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 CLNKQ7Z7G1 428 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 ASB5Q8WWX0 329 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 SEMA4DQ92854 862 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 TCEAL3Q969E4 200 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 AMBRA1Q9C0C7 1298 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 NELFAQ9H3P2 528 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 IL1RAPQ9NPH3 570 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 OLAHQ9NV23 265 aa4.82□□□□□ -1.64
SCN1A-218ENST00000640036 C14orf105Q9NVL8 296 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms