RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 NUP107P57740 925 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 PDAP1Q13442 181 aaKnown RBP15.27■□□□□ 0.04
CLN3-255ENST00000637100 GXYLT1Q4G148 440 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 XKR6Q5GH73 641 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 FAM45BPQ6NSW5 357 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 PAOXQ6QHF9 649 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 SLCO4C1Q6ZQN7 724 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 ZNF595Q8IYB9 648 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 TMEM156Q8N614 296 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 TMEM52Q8NDY8 209 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 OR2M7Q8NG81 312 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 FAM45AQ8TCE6 357 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 SLCO2A1Q92959 643 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 MS4A6EQ96DS6 147 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 TMUB1Q9BVT8 246 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 UCK2Q9BZX2 261 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 PITHD1Q9GZP4 211 aaPredicted RBP15.27■□□□□ 0.04
CLN3-255ENST00000637100 ADAP2Q9NPF8 381 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 MYOTQ9UBF9 498 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 SLC22A14Q9Y267 594 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 JRKLQ9Y4A0 524 aa15.27■□□□□ 0.04
CLN3-255ENST00000637100 NIPBLQ6KC79 2804 aaeCLIP15.27■□□□□ 0.03
CLN3-255ENST00000637100 ZNF407Q9C0G0 2248 aa15.27■□□□□ 0.03
CLN3-255ENST00000637100 PINLYPA6NC86 204 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 NKX2-6A6NCS4 301 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 USP27XA6NNY8 438 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 DNALI1O14645 258 aaPredicted RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 KLK8O60259 260 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 GUCA1CO95843 209 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 C1GALT1C1LP0DN25 315 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 ZNF37AP17032 561 aaPredicted RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 HNRNPH1P31943 449 aaKnown RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 HNF4AP41235 474 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 SLC6A12P48065 614 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 HNRNPFP52597 415 aaKnown RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 RAB38P57729 211 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 GPR85P60893 370 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 STXBP1P61764 594 aaKnown RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 ELAVL1Q15717 326 aaKnown RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 TOR1AIP1Q5JTV8 583 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 STEAP4Q687X5 459 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 CCDC71Q8IV32 467 aaPredicted RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 TTLQ8NG68 377 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 OR8K3Q8NH51 312 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 ACTRT1Q8TDG2 376 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 GRK7Q8WTQ7 553 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 NCLNQ969V3 563 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 POM121Q96HA1 1249 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 TSNARE1Q96NA8 513 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 NAP1L3Q99457 506 aaPredicted RBP15.26■□□□□ 0.03
CLN3-255ENST00000637100 PRTFDC1Q9NRG1 225 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 KCMF1Q9P0J7 381 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 FBXW2Q9UKT8 454 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 DYRK1BQ9Y463 629 aa15.26■□□□□ 0.03
CLN3-255ENST00000637100 GOLGA6L6A8MZA4 724 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 CLEC3AO75596 197 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 PPP2R1BP30154 601 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 HNMTP50135 292 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 BTN3A2P78410 334 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 PMPCAQ10713 525 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 FOXO1Q12778 655 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 CBLBQ13191 982 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 RTL6Q6ICC9 239 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 TMIGD1Q6UXZ0 262 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 TMPRSS11BQ86T26 416 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 TMEM132CQ8N3T6 1108 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 MORN4Q8NDC4 146 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 PTPMT1Q8WUK0 201 aaPredicted RBP15.25■□□□□ 0.03
CLN3-255ENST00000637100 RASL10BQ96S79 203 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 WDR83Q9BRX9 315 aaKnown RBP15.25■□□□□ 0.03
CLN3-255ENST00000637100 TTYH2Q9BSA4 534 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 MCMBPQ9BTE3 642 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 DEFB127Q9H1M4 99 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 RHBGQ9H310 441 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 SLC17A6Q9P2U8 582 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 VTI1BQ9UEU0 232 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 OARD1Q9Y530 152 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 FAM215AQ9Y5M1 114 aa15.25■□□□□ 0.03
CLN3-255ENST00000637100 PABPN1LA6NDY0 278 aaKnown RBP15.24■□□□□ 0.03
CLN3-255ENST00000637100 PGRMC1O00264 195 aaKnown RBP15.24■□□□□ 0.03
CLN3-255ENST00000637100 CDC7O00311 574 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 CLDN4O14493 209 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 BCKDKO14874 412 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 NRDCO43847 1150 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 SUSD5O60279 629 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 CDC40O60508 579 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-255ENST00000637100 CTNSO60931 367 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 BANF1O75531 89 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 OR2J2O76002 312 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 OR6B1O95007 311 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 GNAZP19086 355 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 CNR1P21554 472 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 DNAJA1P31689 397 aaKnown RBP15.24■□□□□ 0.03
CLN3-255ENST00000637100 PPIAP62937 165 aaKnown RBP15.24■□□□□ 0.03
CLN3-255ENST00000637100 CCZ1BP86790 482 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 CCZ1P86791 482 aaPredicted RBP15.24■□□□□ 0.03
CLN3-255ENST00000637100 RBBP5Q15291 538 aaKnown RBP15.24■□□□□ 0.03
CLN3-255ENST00000637100 NDUFAF5Q5TEU4 345 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 CES4AQ5XG92 561 aa15.24■□□□□ 0.03
CLN3-255ENST00000637100 TRMT10BQ6PF06 316 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms