RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CCDC166P0CW27 439 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 OC90Q02509 493 aaPredicted RBP17.76■□□□□ 0.43
CDX1-202ENST00000616154 CSHL1Q14406 222 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 SLC29A2Q14542 456 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 DEFB134Q4QY38 66 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 NXPE4Q6UWF7 544 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 GDF7Q7Z4P5 450 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 SIAH3Q8IW03 269 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 CTAGE3PQ8IX95 158 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 TCAIMQ8N3R3 496 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 TBC1D19Q8N5T2 526 aa17.76■□□□□ 0.43
CDX1-202ENST00000616154 FAM98AQ8NCA5 519 aaKnown RBP17.76■□□□□ 0.43
CDX1-202ENST00000616154 NPIPA5E9PKD4 350 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 DNAJB6O75190 326 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 SP1P08047 785 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 ESRRAP11474 423 aaPredicted RBP17.75■□□□□ 0.43
CDX1-202ENST00000616154 COX6B1P14854 86 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 PHBP35232 272 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 ST13P50502 369 aaKnown RBP17.75■□□□□ 0.43
CDX1-202ENST00000616154 SMSP52788 366 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 OLR1P78380 273 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 RGS1Q08116 209 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 SLC25A25Q6KCM7 469 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 QSOX2Q6ZRP7 698 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 FRA10AC1Q70Z53 315 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 GALNTL5Q7Z4T8 443 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 RPS19BP1Q86WX3 136 aaKnown RBP17.75■□□□□ 0.43
CDX1-202ENST00000616154 SPPL2CQ8IUH8 684 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 PPM1NQ8N819 430 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 PDPRQ8NCN5 879 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 KIAA1191Q96A73 305 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 EGFL8Q99944 293 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 TMEM79Q9BSE2 394 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 TSPAN10Q9H1Z9 355 aaPredicted RBP17.75■□□□□ 0.43
CDX1-202ENST00000616154 CDCP1Q9H5V8 836 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 CLK4Q9HAZ1 481 aaKnown RBP17.75■□□□□ 0.43
CDX1-202ENST00000616154 LRFN1Q9P244 771 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 FETUBQ9UGM5 382 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 NPIPA1Q9UND3 350 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 DYRK1BQ9Y463 629 aa17.75■□□□□ 0.43
CDX1-202ENST00000616154 A0A087WUV0 522 aaPredicted RBP17.74■□□□□ 0.43
CDX1-202ENST00000616154 B3GALT4O96024 378 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 SERPIND1P05546 499 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 ZNF888P0CJ79 500 aaPredicted RBP17.74■□□□□ 0.43
CDX1-202ENST00000616154 SLC35E2BP0CK96 405 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 OR4D1Q15615 310 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 SLCO4C1Q6ZQN7 724 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 ABHD13Q7L211 337 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 CCDC91Q7Z6B0 441 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 KIF2BQ8N4N8 673 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 ANKRD53Q8N9V6 530 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 ADAMTS18Q8TE60 1221 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 UTP15Q8TED0 518 aaKnown RBP17.74■□□□□ 0.43
CDX1-202ENST00000616154 SEC16BQ96JE7 1060 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 TSNARE1Q96NA8 513 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 AIF1LQ9BQI0 150 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 SLC6A16Q9GZN6 736 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 PITHD1Q9GZP4 211 aaPredicted RBP17.74■□□□□ 0.43
CDX1-202ENST00000616154 EHD1Q9H4M9 534 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 GPRC5BQ9NZH0 403 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 TACC2O95359 2948 aa17.74■□□□□ 0.43
CDX1-202ENST00000616154 CCDC189A1A4V9 331 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 TAPBPO15533 448 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 NME2P1O60361 137 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 B4GALT2O60909 372 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 FAM155BO75949 473 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 SMIM10L1P0DMW3 83 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 GNAZP19086 355 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 NME2P22392 152 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 GSTM2P28161 218 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 TPP2P29144 1249 aaPredicted RBP17.73■□□□□ 0.43
CDX1-202ENST00000616154 CRABP2P29373 138 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 HYAL2Q12891 473 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 E2F2Q14209 437 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 EFTUD2Q15029 972 aaKnown RBP eCLIP17.73■□□□□ 0.43
CDX1-202ENST00000616154 ZNF468Q5VIY5 522 aaPredicted RBP17.73■□□□□ 0.43
CDX1-202ENST00000616154 SULT1C3Q6IMI6 304 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.73■□□□□ 0.43
CDX1-202ENST00000616154 TMPRSS11BQ86T26 416 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 GPSM1Q86YR5 675 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 SPATA6LQ8N4H0 392 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 TRPV3Q8NET8 790 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 CREB3L4Q8TEY5 395 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 UBLCP1Q8WVY7 318 aaPredicted RBP17.73■□□□□ 0.43
CDX1-202ENST00000616154 SMIM10Q96HG1 83 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 PTCHD1Q96NR3 888 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 CAPS2Q9BXY5 557 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 TRIM45Q9H8W5 580 aaPredicted RBP17.73■□□□□ 0.43
CDX1-202ENST00000616154 PTBP2Q9UKA9 531 aaKnown RBP17.73■□□□□ 0.43
CDX1-202ENST00000616154 MEMO1Q9Y316 297 aa17.73■□□□□ 0.43
CDX1-202ENST00000616154 HMX2A2RU54 273 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 SAGE2PA6NJ88 616 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 DYNC1I1O14576 645 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 ASNA1O43681 348 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 PRMT3O60678 531 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 SLC25A12O75746 678 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 WDR47O94967 919 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 SERPINA6P08185 405 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 GDF5P43026 501 aa17.72■□□□□ 0.43
CDX1-202ENST00000616154 C18orf21Q32NC0 220 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms