RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GABRQQ9UN88 632 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 SLC45A1Q9Y2W3 748 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CMAHPQ9Y471 501 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 FAM172BPA6NC97 362 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SCAMP2O15127 329 aaKnown RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 ENTPD6O75354 484 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SLC16A8O95907 504 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ELFN1P0C7U0 828 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 HLA-EP13747 358 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 PRKCZQ05513 592 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 WSCD2Q2TBF2 565 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ATAT1Q5SQI0 421 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 RSPO2Q6UXX9 243 aaPredicted RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 SHFQ7M4L6 423 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 TEX47Q8TBZ9 253 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 MYLIPQ8WY64 445 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 TMEM80Q96HE8 168 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ZNF607Q96SK3 696 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 PKMYT1Q99640 499 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ARHGAP39Q9C0H5 1083 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SPRTNQ9H040 489 aaPredicted RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 NKIRAS2Q9NYR9 191 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 LHX3Q9UBR4 397 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 N6AMT1Q9Y5N5 214 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ARHGAP33O14559 1287 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 TSPAN6O43657 245 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SSX4O60224 188 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 KCNK2O95069 426 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 JUNDP17535 347 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 CR2P20023 1033 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 AOAHP28039 575 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 PTSQ03393 145 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 MICAQ29983 383 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 RPS26P11Q5JNZ5 115 aaPredicted RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 MORN1Q5T089 497 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 MACC1Q6ZN28 852 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 DPY19L3Q6ZPD9 716 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 BCDIN3DQ7Z5W3 292 aaKnown RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 ZNF683Q8IZ20 524 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 OXR1Q8N573 874 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ZNF614Q8N883 585 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 DENND6BQ8NEG7 585 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 LILRB4Q8NHJ6 448 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 TRIB2Q92519 343 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 FATE1Q969F0 183 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 WBP2Q969T9 261 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 COL26A1Q96A83 441 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 TESCQ96BS2 214 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 KCTD7Q96MP8 289 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 WACQ9BTA9 647 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 TMED9Q9BVK6 235 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SLC12A9Q9BXP2 914 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 UCKL1Q9NWZ5 548 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 GLTPD2A6NH11 291 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 RTCAO00442 366 aaKnown RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 WBP4O75554 376 aaKnown RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 H1F0P07305 194 aaKnown RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 RPL3P39023 403 aaKnown RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 PIK3CBP42338 1070 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SMU1Q2TAY7 513 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 KIAA1161Q6NSJ0 714 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 LAX1Q8IWV1 398 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 ARMC5Q96C12 935 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 SCLYQ96I15 445 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 CDADC1Q9BWV3 514 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 NMNAT1Q9HAN9 279 aaPredicted RBP12.09□□□□□ -0.47
LIG1-221ENST00000613670 C5AR2Q9P296 337 aa12.09□□□□□ -0.47
LIG1-221ENST00000613670 A0A1W2PQL4 384 aaPredicted RBP12.08□□□□□ -0.47
LIG1-221ENST00000613670 MEIOCA2RUB1 952 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 BTN3A3O00478 584 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 POP4O95707 220 aaKnown RBP12.08□□□□□ -0.47
LIG1-221ENST00000613670 SDC2P34741 201 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 ZNF763Q0D2J5 394 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 VEZF1Q14119 521 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 MPPE1Q53F39 396 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 COX20Q5RI15 118 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 ADNP2Q6IQ32 1131 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 CD300LGQ6UXG3 332 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 GRPEL2Q8TAA5 225 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 REEP4Q9H6H4 257 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 SEC14L4Q9UDX3 406 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 FBXO10Q9UK96 956 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 ADAM30Q9UKF2 790 aa12.08□□□□□ -0.47
LIG1-221ENST00000613670 TRIM64A6NGJ6 449 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 HNRNPCL2B2RXH8 293 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 GALTP07902 379 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 ALPPL2P10696 532 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 RPS3P23396 243 aaKnown RBP eCLIP12.08□□□□□ -0.48
LIG1-221ENST00000613670 TIA1P31483 386 aaKnown RBP eCLIP12.08□□□□□ -0.48
LIG1-221ENST00000613670 ETV3P41162 512 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 TGM4P49221 684 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 CCT3P49368 545 aaKnown RBP12.08□□□□□ -0.48
LIG1-221ENST00000613670 ACLYP53396 1101 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 HBA1P69905 142 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 LMAN2Q12907 356 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 CRHR2Q13324 411 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 SPIN4Q56A73 249 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 CADM2Q8N3J6 435 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 OR7G3Q8NG95 312 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 SLC9A6Q92581 669 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms