RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 DIAPH2O60879 1101 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 B4GALT2O60909 372 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 H2AFYO75367 372 aaKnown RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 TTC4O95801 387 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 IGHG3P01860 377 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SERPIND1P05546 499 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SERPINA6P08185 405 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CDH1P12830 882 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 NPPBP16860 134 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 COILP38432 576 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 MAGEA6P43360 314 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SCTRP47872 440 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 MAN2A2P49641 1150 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 HNMTP50135 292 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 NUP107P57740 925 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 IL2P60568 153 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 TGM3Q08188 693 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 DHX9Q08211 1270 aaKnown RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 CTBP1Q13363 440 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SNX1Q13596 522 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ELAVL1Q15717 326 aaKnown RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 HSPB2Q16082 182 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SWI5Q1ZZU3 235 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 HYAL4Q2M3T9 481 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 RNFT1Q5M7Z0 435 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 RIPPLY2Q5TAB7 128 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 FBXW10Q5XX13 1052 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ARSKQ6UWY0 536 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 HSDL2Q6YN16 418 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CYHR1Q6ZMK1 362 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 RTL4Q6ZR62 310 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 MICALCLQ6ZW33 695 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 PRSS41Q7RTY9 318 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 PIWIL4Q7Z3Z4 852 aaKnown RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 FGD2Q7Z6J4 655 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CPNE9Q8IYJ1 553 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 FBXW8Q8N3Y1 598 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ZNF511Q8NB15 262 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ZNF740Q8NDX6 193 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 MCUQ8NE86 351 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 NFAM1Q8NET5 270 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 OR8K3Q8NH51 312 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 OR14A16Q8NHC5 309 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CD200R1Q8TD46 325 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SLC5A11Q8WWX8 675 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ZNF669Q96BR6 464 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 NAP1L3Q99457 506 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 GPR21Q99679 349 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 TTYH2Q9BSA4 534 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CAPS2Q9BXY5 557 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 RBCK1Q9BYM8 510 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CLEC4MQ9H2X3 399 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 LDAHQ9H6V9 325 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 PELI2Q9HAT8 420 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 IL1RL2Q9HB29 575 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ADAP2Q9NPF8 381 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SACM1LQ9NTJ5 587 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 C20orf96Q9NUD7 363 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.86□□□□□ -1.475e-24■■■■■ 156.6
CUX1-220ENST00000607092 QPCTLQ9NXS2 382 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ZFATQ9P243 1243 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 COPS7AQ9UBW8 275 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 ACAD8Q9UKU7 415 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CORO1CQ9ULV4 474 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 PACSIN2Q9UNF0 486 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 PDE10AQ9Y233 779 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 L3MBTL1Q9Y468 752 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 CLCA3PQ9Y6N3 262 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 SPACA6W5XKT8 324 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 HRNRQ86YZ3 2850 aaPredicted RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 ZNF407Q9C0G0 2248 aa5.86□□□□□ -1.47
CUX1-220ENST00000607092 PRRC2AP48634 2157 aaKnown RBP5.86□□□□□ -1.47
CUX1-220ENST00000607092 A0A1B0GVC2 190 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 FEZF1A0PJY2 475 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ZNF860A6NHJ4 632 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SYT5O00445 386 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ARHGEF9O43307 516 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 B3GALT2O43825 422 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 LCMT2O60294 686 aaKnown RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 MAN1A2O60476 641 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 MYO1DO94832 1006 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 RAF1P04049 648 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 P04436 131 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ZNF888P0CJ79 500 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 COX7A2P14406 83 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 GNAZP19086 355 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 CNR1P21554 472 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SLC1A2P43004 574 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ASCL1P50553 236 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 STX4Q12846 297 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 GPS1Q13098 491 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SLC13A2Q13183 592 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 CUL1Q13616 776 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 BMPR2Q13873 1038 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SERTAD2Q14140 314 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SLC10A1Q14973 349 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 FLYWCH1Q4VC44 716 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 C1orf185Q5T7R7 199 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ZNF468Q5VIY5 522 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 ZNF585AQ6P3V2 769 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms