RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 EFCAB3Q8N7B9 438 aa17.1■□□□□ 0.33
VRK3-225ENST00000601912 ZCCHC10Q8TBK6 192 aa17.1■□□□□ 0.33
VRK3-225ENST00000601912 N4BP2L2Q92802 583 aaPredicted RBP17.1■□□□□ 0.33
VRK3-225ENST00000601912 CGREF1Q99674 301 aa17.1■□□□□ 0.33
VRK3-225ENST00000601912 LYARQ9NX58 379 aaKnown RBP17.1■□□□□ 0.33
VRK3-225ENST00000601912 PLCL2Q9UPR0 1127 aa17.1■□□□□ 0.33
VRK3-225ENST00000601912 BTBD3Q9Y2F9 522 aa17.1■□□□□ 0.33
VRK3-225ENST00000601912 A0A096LPI6 279 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 LY6G6EA0A0G2JKS1 128 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 C4orf51C9J302 202 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 ZNF883P0CG24 379 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 SMIM10L1P0DMW3 83 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 DRD2P14416 443 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 ALOX12P18054 663 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 TRPC1P48995 793 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 ALDH9A1P49189 494 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 DUSP3P51452 185 aaPredicted RBP17.09■□□□□ 0.33
VRK3-225ENST00000601912 WNT3P56703 355 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 DEFB110Q30KQ9 67 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 INAVAQ3KP66 663 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 SPATS1Q496A3 300 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 WASHC2DQ5SRD0 308 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 NANOGP8Q6NSW7 305 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 TMEM214Q6NUQ4 689 aaKnown RBP17.09■□□□□ 0.33
VRK3-225ENST00000601912 TICAM1Q8IUC6 712 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 AMER3Q8N944 861 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 CCDC124Q96CT7 223 aaKnown RBP17.09■□□□□ 0.33
VRK3-225ENST00000601912 SMIM10Q96HG1 83 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 GBP5Q96PP8 586 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 PANX1Q96RD7 426 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 SERINC2Q96SA4 455 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 SH3GL1Q99961 368 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 NANOGQ9H9S0 305 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 SERHLQ9NQF3 203 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 ABCD2Q9UBJ2 740 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.09■□□□□ 0.33
VRK3-225ENST00000601912 BTNL2Q9UIR0 455 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 U3KQA8 63 aa17.09■□□□□ 0.33
VRK3-225ENST00000601912 MN1Q10571 1320 aaPredicted RBP17.09■□□□□ 0.33
VRK3-225ENST00000601912 RNASET2O00584 256 aaKnown RBP17.08■□□□□ 0.32
VRK3-225ENST00000601912 TBX19O60806 448 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 CERS1P27544 350 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 HNRNPFP52597 415 aaKnown RBP17.08■□□□□ 0.32
VRK3-225ENST00000601912 DAB2P98082 770 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 SQSTM1Q13501 440 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 CEACAM7Q14002 265 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 PLA2G2CQ5R387 149 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 LRIF1Q5T3J3 769 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 MRM1Q6IN84 353 aaKnown RBP17.08■□□□□ 0.32
VRK3-225ENST00000601912 CYB5D1Q6P9G0 228 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 SLC15A3Q8IY34 581 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 KIAA2013Q8IYS2 634 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 OR8J3Q8NGG0 315 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 DENND2DQ9H6A0 471 aaPredicted RBP17.08■□□□□ 0.32
VRK3-225ENST00000601912 PACSIN3Q9UKS6 424 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 PCDHGB4Q9UN71 923 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 ASB4Q9Y574 426 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 PCDHA9Q9Y5H5 950 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 SLC22A7Q9Y694 548 aa17.08■□□□□ 0.32
VRK3-225ENST00000601912 A8MUI8 341 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 B3GALT2O43825 422 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 SCN2BO60939 215 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 CKMT1AP12532 417 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 CSF2RBP32927 897 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 HSD11B2P80365 405 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 CFHR1Q03591 330 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 DEFB134Q4QY38 66 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 TCTE1Q5JU00 501 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 SNAP47Q5SQN1 464 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 NDUFAF5Q5TEU4 345 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 TCEAL6Q6IPX3 200 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 DNAJC14Q6Y2X3 702 aaPredicted RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 PRSS42Q7Z5A4 293 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 KMT5CQ86Y97 462 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 RNF148Q8N7C7 305 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 TCEAL3Q969E4 200 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 TMEM125Q96AQ2 219 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 ZNF764Q96H86 408 aaPredicted RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 CCDC115Q96NT0 180 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 ANKRD27Q96NW4 1050 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 INPP5KQ9BT40 448 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 PAIP1Q9H074 479 aaKnown RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 TEX10Q9NXF1 929 aaPredicted RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 EHD3Q9NZN3 535 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 VAPAQ9P0L0 249 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 POMPQ9Y244 141 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 PCDHGB2Q9Y5G2 931 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 NVLO15381 856 aaKnown RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 TOX3O15405 576 aaPredicted RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 HCRTR1O43613 425 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 CPSF4O95639 269 aaKnown RBP17.07■□□□□ 0.32
VRK3-225ENST00000601912 B3GALT4O96024 378 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 NDUFA9Q16795 377 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 ZNF385BQ569K4 471 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 PERM1Q5SV97 790 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 TMEM71Q6P5X7 295 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 DGLUCYQ7Z3D6 616 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 FAM47BQ8NA70 645 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 MIEF2Q96C03 454 aa17.07■□□□□ 0.32
VRK3-225ENST00000601912 STARD5Q9NSY2 213 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms