RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	MAGEE2	Q8TD90	523 aa	Predicted RBP	11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	JPH3	Q8WXH2	748 aa	Predicted RBP	11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	MTFMT	Q96DP5	389 aa	Known RBP	11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	ITCH	Q96J02	903 aa		11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	VPS50	Q96JG6	964 aa		11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	FCRL1	Q96LA6	429 aa		11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	HBEGF	Q99075	208 aa		11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	KAT8	Q9H7Z6	458 aa	Known RBP	11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	UCKL1	Q9NWZ5	548 aa		11.18	□□□□□ -0.62
VRK3-223	ENST00000601341	PIPSL	A2A3N6	862 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	ISM1	B1AKI9	464 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	GSTA4	O15217	222 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	DFNA5	O60443	496 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	CFI	P05156	583 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	THRB	P10828	461 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	NEK2	P51955	445 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	DGKQ	P52824	942 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	NUBP1	P53384	320 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	IL18R1	Q13478	541 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	DCTN2	Q13561	401 aa	Known RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	PTGR1	Q14914	329 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	KIR2DS3	Q14952	304 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	C17orf82	Q86X59	251 aa	Predicted RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	FAM129C	Q86XR2	697 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	LAS2	Q8IYD9	372 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	MICU2	Q8IYU8	434 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	ARL14	Q8N4G2	192 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	OR4K1	Q8NGD4	311 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	WDR20	Q8TBZ3	569 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	STARD8	Q92502	1023 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	OR52E6	Q96RD3	313 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	SEPHS2	Q99611	448 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	RBM4B	Q9BQ04	359 aa	Known RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	AIF1L	Q9BQI0	150 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	THUMPD3	Q9BV44	507 aa	Known RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	RBM4	Q9BWF3	364 aa	Known RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	TRIM8	Q9BZR9	551 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	UCK1	Q9HA47	277 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	MRPS30	Q9NP92	439 aa	Known RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	DCAF13	Q9NV06	445 aa	Known RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	SPHK1	Q9NYA1	384 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	ADGRE2	Q9UHX3	823 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	ENTPD2	Q9Y5L3	495 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	GMEB1	Q9Y692	573 aa		11.17	□□□□□ -0.62
VRK3-223	ENST00000601341	OR6C74	A6NCV1	312 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341		G3V2T6	193 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341		H7BY64	318 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	BTN3A3	O00478	584 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	YKT6	O15498	198 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	NOBOX	O60393	691 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HSD3B1	P14060	373 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HOXB9	P17482	250 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HSD3B2	P26439	372 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	CMPK1	P30085	196 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PEBP1	P30086	187 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TRPC1	P48995	793 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	MAZ	P56270	477 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	GABARAPL2	P60520	117 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ABHD18	Q0P651	414 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	BNIP3	Q12983	259 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	CSTF3	Q12996	717 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SELPLG	Q14242	412 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SPANXN4	Q5MJ08	99 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ZNF773	Q6PK81	442 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TMIGD1	Q6UXZ0	262 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ARHGAP22	Q7Z5H3	698 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	GPR180	Q86V85	440 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	MSRB3	Q8IXL7	192 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SLC25A45	Q8N413	288 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	OR2L3	Q8NG85	312 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HDAC2	Q92769	488 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TMBIM1	Q969X1	311 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ISOC1	Q96CN7	298 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	REXO5	Q96IC2	774 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	MAGED4	Q96JG8	741 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PRAP1	Q96NZ9	151 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	CPPED1	Q9BRF8	314 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	NPL	Q9BXD5	320 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ACPT	Q9BZG2	426 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TWSG1	Q9GZX9	223 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PAIP1	Q9H074	479 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PRM3	Q9NNZ6	103 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ETAA1	Q9NY74	926 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SLC25A37	Q9NYZ2	338 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	BLOC1S6	Q9UL45	172 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SLC6A14	Q9UN76	642 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TSC22D4	Q9Y3Q8	395 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341		A0A1B0GTQ1	180 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	FAM86C2P	A6NEL3	165 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TNFRSF10A	O00220	468 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	CXCR6	O00574	342 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PPM1D	O15297	605 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	GALR2	O43603	387 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SNAP29	O95721	258 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms