RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 AKAP1Q92667 903 aaKnown RBP eCLIP19.72■□□□□ 0.753e-7■■■■■ 28.2
UPF1-207ENST00000599848 TOP1MTQ969P6 601 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 KATNBL1Q9H079 304 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 CICQ96RK0 1608 aaPredicted RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 DISC1C4P0D8 188 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 H6PDO95479 791 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 OXSR1O95747 527 aaPredicted RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 C1orf61Q13536 156 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 ZNF234Q14588 700 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 QPCTQ16769 361 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 FBXO48Q5FWF7 155 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 IDNKQ5T6J7 187 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 PMM1Q92871 262 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 ESAMQ96AP7 390 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 KCNIP1Q9NZI2 227 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 CYB5BO43169 146 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 H2BFMP0C1H6 154 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 AP2S1P53680 142 aaPredicted RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 FADDQ13158 208 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 EML3Q32P44 896 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 PRAMEF17Q5VTA0 474 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 MEDAGQ5VYS4 303 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 PACRGLQ8N7B6 248 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 OR4F6Q8NGB9 312 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 ELP5Q8TE02 316 aa19.72■□□□□ 0.75
UPF1-207ENST00000599848 CPEB1Q9BZB8 566 aaKnown RBP19.72■□□□□ 0.75
UPF1-207ENST00000599848 MYCLP1P12525 358 aaPredicted RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 STOMP27105 288 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 GJA8P48165 433 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 HMGCS1Q01581 520 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 RAB11FIP2Q7L804 512 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 TMEM151BQ8IW70 566 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 UCN3Q969E3 161 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 MCHR1Q99705 422 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 C16orf70Q9BSU1 422 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 MND1Q9BWT6 205 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 YTHDF1Q9BYJ9 559 aaKnown RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 OR51B5Q9H339 312 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 CACNG4Q9UBN1 327 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 RIMKLBQ9ULI2 386 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 C5orf51A6NDU8 294 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ZNF28P17035 718 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ACTC1P68032 377 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ACTA1P68133 377 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 MERTKQ12866 999 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 LASP1Q14847 261 aaKnown RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 PLEKHN1Q494U1 663 aaPredicted RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 ARL14Q8N4G2 192 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 DIO2Q92813 273 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 SEC14L4Q9UDX3 406 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 DNAJB4Q9UDY4 337 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ACAD8Q9UKU7 415 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 AP1M2Q9Y6Q5 423 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 OR51F1A6NGY5 319 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ABLIM1O14639 778 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 GLSO94925 669 aaPredicted RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 EFR3AQ14156 821 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ARL6IP1Q15041 203 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 OR9A4Q8NGU2 314 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 CEP76Q8TAP6 659 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 GPR22Q99680 433 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 TM9SF2Q99805 663 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 URM1Q9BTM9 101 aaKnown RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 CADM1Q9BY67 442 aaKnown RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 TPT1P8Q9HAU6 139 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 MCTS1Q9ULC4 181 aaKnown RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 NFAT5O94916 1531 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 H7BY64 318 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 ICAM2P13598 275 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 SGCAQ16586 387 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 PRAP1Q96NZ9 151 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 NECAB3Q96P71 396 aaPredicted RBP19.71■□□□□ 0.75
UPF1-207ENST00000599848 TRPV4Q9HBA0 871 aa19.71■□□□□ 0.75
UPF1-207ENST00000599848 C6P13671 934 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 ZNF460Q14592 562 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 RNASE12Q5GAN4 147 aaKnown RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 C1orf94Q6P1W5 598 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 TTLL10Q6ZVT0 673 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 CBR4Q8N4T8 237 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 OR14L1PQ8NHC6 308 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 PPP1R14BQ96C90 147 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 AMDHD1Q96NU7 426 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 SLC5A7Q9GZV3 580 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 MKS1Q9NXB0 559 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 MED11Q9P086 117 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 MT-ND2P03891 347 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 ZNF865P0CJ78 1059 aaPredicted RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 PORP16435 677 aaPredicted RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 EFNA1P20827 205 aaPredicted RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 MTPNP58546 118 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 RIPPLY1Q0D2K3 151 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 GRIK2Q13002 908 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 OR2T5Q6IEZ7 315 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 ZNF615Q8N8J6 731 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 OR2T29Q8NH02 315 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 SH3YL1Q96HL8 342 aaPredicted RBP19.7■□□□□ 0.74
UPF1-207ENST00000599848 TPSD1Q9BZJ3 242 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 GPR62Q9BZJ7 368 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 ERVK-18Q9QC07 812 aa19.7■□□□□ 0.74
UPF1-207ENST00000599848 IGLON5A6NGN9 336 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms