RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 SEC24DO94855 1032 aaPredicted RBP13.03□□□□□ -0.32
UPF1-205ENST00000598209 CELA2AP08217 269 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 PRR35P0CG20 571 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 TSPAN8P19075 237 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 CDH13P55290 713 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 RPS13P62277 151 aaKnown RBP13.03□□□□□ -0.32
UPF1-205ENST00000598209 BTG2P78543 158 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 UNC50Q53HI1 259 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 SFT2D3Q587I9 215 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 ZNF678Q5SXM1 525 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 DEPDC1Q5TB30 811 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 AGAP7PQ5VUJ5 663 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 ZNF793Q6ZN11 406 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 ATG14Q6ZNE5 492 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 MILR1Q7Z6M3 343 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 HPS6Q86YV9 775 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 SLC22A9Q8IVM8 553 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 OR4F6Q8NGB9 312 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 WDR20Q8TBZ3 569 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 PPP4R1Q8TF05 950 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 IMMP1LQ96LU5 166 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 PTCHD1Q96NR3 888 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 AGAP4Q96P64 663 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 TMEM237Q96Q45 408 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 CENPKQ9BS16 269 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 ROGDIQ9GZN7 287 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 PRDM9Q9NQV7 894 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 RAB21Q9UL25 225 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 CNTRLQ7Z7A1 2325 aa13.02□□□□□ -0.32
UPF1-205ENST00000598209 CFAP46Q8IYW2 2715 aa13.02□□□□□ -0.32
UPF1-205ENST00000598209 PPP6CO00743 305 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 SUPT7LO94864 414 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 OTCP00480 354 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 PROCP04070 461 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 SERPINA7P05543 415 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 ICAM2P13598 275 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 PLA2G2AP14555 144 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 KRT4P19013 534 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 IMPDH1P20839 514 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 MAOAP21397 527 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 ATP5A1P25705 553 aaKnown RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 PTX3P26022 381 aaPredicted RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 CRHR1P34998 444 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 DEKP35659 375 aaKnown RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 CASRP41180 1078 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 SSR2P43308 183 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 CCT5P48643 541 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 NEK2P51955 445 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 RAP1GDS1P52306 607 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 PRKAA2P54646 552 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 LIM2P55344 173 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 OR4D2P58180 307 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 CLCQ05315 142 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 ACTN3Q08043 901 aaPredicted RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 AP5B1Q2VPB7 878 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 GGTA1PQ4G0N0 100 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 NADK2Q4G0N4 442 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 TTC19Q6DKK2 380 aaPredicted RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 RIPOR1Q6ZS17 1223 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 C4orf33Q8N1A6 199 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 MREGQ8N565 214 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 AMER2Q8N7J2 671 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 RBMXL3Q8N7X1 1067 aaKnown RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 ACOT4Q8N9L9 421 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 FAM47BQ8NA70 645 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 ADAMTS18Q8TE60 1221 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 TRPC4APQ8TEL6 797 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 RGMAQ96B86 450 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 MTFMTQ96DP5 389 aaKnown RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 WDR77Q9BQA1 342 aaPredicted RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 SORBS1Q9BX66 1292 aaKnown RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 ROPN1BQ9BZX4 212 aaPredicted RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 ROPN1Q9HAT0 212 aaPredicted RBP13.02□□□□□ -0.33
UPF1-205ENST00000598209 GRID1Q9ULK0 1009 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 DAPP1Q9UN19 280 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 MMACHCQ9Y4U1 282 aa13.02□□□□□ -0.33
UPF1-205ENST00000598209 ZNF462Q96JM2 2506 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 IGKV3D-11A0A0A0MRZ8 115 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 A0A1B0GTL3 188 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 G3V2L1 256 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 FOXE1O00358 373 aaPredicted RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 PLPP1O14494 284 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 COPEO14579 308 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 PLIN3O60664 434 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 SCELO95171 688 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 MYL2P10916 166 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 ITGAMP11215 1152 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 HIST1H1TP22492 207 aaPredicted RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 HNRNPFP52597 415 aaKnown RBP13.01□□□□□ -0.33
UPF1-205ENST00000598209 AP2B1P63010 937 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 SLC18A2Q05940 514 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 IFT88Q13099 833 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 RCN2Q14257 317 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 BTBD16Q32M84 506 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 CCDC153Q494R4 210 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 FRG2Q64ET8 278 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 PLAG1Q6DJT9 500 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 OR4C11Q6IEV9 310 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 LETMD1Q6P1Q0 360 aa13.01□□□□□ -0.33
UPF1-205ENST00000598209 PAPD4Q6PIY7 484 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms