RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PSMD12O00232 456 aaPredicted RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 H2AFYO75367 372 aaKnown RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 NEURL1O76050 574 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 S100BP04271 92 aaPredicted RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 C2P06681 752 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 TPP2P29144 1249 aaPredicted RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 CRABP2P29373 138 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 CD96P40200 585 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 LIM2P55344 173 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 IRF8Q02556 426 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 ACTN3Q08043 901 aaPredicted RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 NAA30Q147X3 362 aaPredicted RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 TBCCQ15814 346 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 C4orf17Q53FE4 359 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 TRIM40Q6P9F5 258 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 UBE3DQ7Z6J8 389 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 ZNF227Q86WZ6 799 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 RELL1Q8IUW5 271 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 CYP4X1Q8N118 509 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 LGI4Q8N135 537 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 RNF175Q8N4F7 328 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 MMGT1Q8N4V1 131 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 SLC5A8Q8N695 610 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 ZNF473Q8WTR7 871 aaKnown RBP12.21□□□□□ -0.45
LIG1-212ENST00000596549 SERINC2Q96SA4 455 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 FUT8Q9BYC5 575 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 ACSS3Q9H6R3 686 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 PRDM7Q9NQW5 492 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 ABI3Q9P2A4 366 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 DAPP1Q9UN19 280 aa12.21□□□□□ -0.45
LIG1-212ENST00000596549 EML6Q6ZMW3 1958 aa12.21□□□□□ -0.46
LIG1-212ENST00000596549 POLEQ07864 2286 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 A0A087X1B8 175 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 LRRC14BA6NHZ5 514 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 A8MUA0 341 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 K7EPI3 171 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 RTCAO00442 366 aaKnown RBP12.2□□□□□ -0.46
LIG1-212ENST00000596549 CYR61O00622 381 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 B3GALT2O43825 422 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 MYO1DO94832 1006 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 STSP08842 583 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 CASP2P42575 452 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 MSH2P43246 934 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 MTTPP55157 894 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 TAS2R50P59544 299 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 PCDH1Q08174 1060 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 SETDB1Q15047 1291 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 OR1C1Q15619 314 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 UAP1Q16222 522 aaPredicted RBP12.2□□□□□ -0.46
LIG1-212ENST00000596549 TECRLQ5HYJ1 363 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 PAGE2BQ5JRK9 111 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 SPINK14Q6IE38 97 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 LAS2Q8IYD9 372 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 PLD6Q8N2A8 252 aaKnown RBP12.2□□□□□ -0.46
LIG1-212ENST00000596549 ARMC10Q8N2F6 343 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 RHEBL1Q8TAI7 183 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 SUN3Q8TAQ9 357 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 FAR2Q96K12 515 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 FRMD6Q96NE9 622 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 GPR78Q96P69 363 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 F2RL3Q96RI0 385 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 UTP23Q9BRU9 249 aaKnown RBP12.2□□□□□ -0.46
LIG1-212ENST00000596549 CDCP1Q9H5V8 836 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 KLHL1Q9NR64 748 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 PRTFDC1Q9NRG1 225 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 OPTCQ9UBM4 332 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 ACOT9Q9Y305 439 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 PCDHGB6Q9Y5F9 930 aa12.2□□□□□ -0.46
LIG1-212ENST00000596549 SPTBN1Q01082 2364 aaKnown RBP12.2□□□□□ -0.46
LIG1-212ENST00000596549 NCOA6Q14686 2063 aaPredicted RBP12.2□□□□□ -0.46
LIG1-212ENST00000596549 RP1L1Q8IWN7 2480 aaPredicted RBP12.19□□□□□ -0.46
LIG1-212ENST00000596549 A0A096LPK6 155 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 ASPDHA6ND91 283 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 LRRTM2O43300 516 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 KLK8O60259 260 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 PRKNO60260 465 aaPredicted RBP12.19□□□□□ -0.46
LIG1-212ENST00000596549 SCELO95171 688 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 COL8A1P27658 744 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 MAGEA12P43365 314 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 SERPINB8P50452 374 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 GPR143P51810 404 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 HSD17B7P56937 341 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 MLF1P58340 268 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 LAPTM5Q13571 262 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 TERF2Q15554 542 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 C1QL3Q5VWW1 255 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 GRHL2Q6ISB3 625 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 MAMDC2Q7Z304 686 aaPredicted RBP12.19□□□□□ -0.46
LIG1-212ENST00000596549 CLNKQ7Z7G1 428 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 LURAP1LQ8IV03 231 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 B3GNT7Q8NFL0 401 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 ADAMTS18Q8TE60 1221 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 ZNF592Q92610 1267 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 ISL2Q96A47 359 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 SORBS1Q9BX66 1292 aaKnown RBP12.19□□□□□ -0.46
LIG1-212ENST00000596549 COPS7BQ9H9Q2 264 aaPredicted RBP12.19□□□□□ -0.46
LIG1-212ENST00000596549 ZNF358Q9NW07 568 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 PPIEQ9UNP9 301 aaKnown RBP12.19□□□□□ -0.46
LIG1-212ENST00000596549 EXPH5Q8NEV8 1989 aa12.19□□□□□ -0.46
LIG1-212ENST00000596549 A0A088AWK7 358 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms