RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 CCNG1P51959 295 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 MTTPP55157 894 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 LIM2P55344 173 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 HERVK_113P63132 956 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 ABRAXAS2Q15018 415 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 NSDHLQ15738 373 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 TMEM35AQ53FP2 167 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 TCHHL1Q5QJ38 904 aaPredicted RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 NIPAL1Q6NVV3 410 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 TRIM40Q6P9F5 258 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 ZYG11AQ6WRX3 759 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 CPEB2Q7Z5Q1 589 aaKnown RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 TRABD2AQ86V40 505 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 ACOT4Q8N9L9 421 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 ATP6V1E2Q96A05 226 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 L3HYPDHQ96EM0 354 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 CMTM7Q96FZ5 175 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 THOC3Q96J01 351 aaKnown RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 FAR2Q96K12 515 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 PTCHD1Q96NR3 888 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 SERINC2Q96SA4 455 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 MAPKAP1Q9BPZ7 522 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 NPLQ9BXD5 320 aaPredicted RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 ERVK-6Q9BXR3 956 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 MFRPQ9BY79 579 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 DAPP1Q9UN19 280 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 PLAAQ9Y263 795 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 CSAG2Q9Y5P2 127 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 NBASA2RRP1 2371 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 MYOCOSA0A1B0GUC4 107 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 WASHC1A8K0Z3 465 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 PLPP1O14494 284 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 UBFD1O14562 309 aaKnown RBP10.47□□□□□ -0.73
VRK3-210ENST00000596121 COPEO14579 308 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 B3GALT2O43825 422 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 PRMT3O60678 531 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 GLRA3O75311 464 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 EEDO75530 441 aaKnown RBP10.47□□□□□ -0.73
VRK3-210ENST00000596121 SUPT7LO94864 414 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 OR4F21O95013 312 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 SCELO95171 688 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 CYC1P08574 325 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 ITGAMP11215 1152 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 TAC1P20366 129 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 PPP2R1BP30154 601 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 BSGP35613 385 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 RAB38P57729 211 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 CLCQ05315 142 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 ZNF844Q08AG5 666 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 SFT2D3Q587I9 215 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 SGO1Q5FBB7 561 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 VWA5B1Q5TIE3 1220 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 FRG2Q64ET8 278 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 B3GNTL1Q67FW5 361 aaPredicted RBP10.47□□□□□ -0.73
VRK3-210ENST00000596121 OR4C11Q6IEV9 310 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 CHSY3Q70JA7 882 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 MILR1Q7Z6M3 343 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 SCUBE1Q8IWY4 988 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 KBTBD2Q8IY47 623 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 IQCKQ8N0W5 287 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 BANPQ8N9N5 519 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 FAM47BQ8NA70 645 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 Q8NA96 180 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 BRIX1Q8TDN6 353 aaKnown RBP10.47□□□□□ -0.73
VRK3-210ENST00000596121 METTL21AQ8WXB1 218 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 UCN3Q969E3 161 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 KCNC2Q96PR1 638 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 FRG2BQ96QU4 278 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 TBCDQ9BTW9 1192 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 TMEM109Q9BVC6 243 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 ROPN1BQ9BZX4 212 aaPredicted RBP10.47□□□□□ -0.73
VRK3-210ENST00000596121 LHPPQ9H008 270 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 GSTO2Q9H4Y5 243 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 ROPN1Q9HAT0 212 aaPredicted RBP10.47□□□□□ -0.73
VRK3-210ENST00000596121 TNFRSF12AQ9NP84 129 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 LUZP4Q9P127 313 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 ADGRE2Q9UHX3 823 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 PCDHGA11Q9Y5H2 935 aa10.47□□□□□ -0.73
VRK3-210ENST00000596121 TCRBV16S1A1N1A0A5B0 115 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 FOXE1O00358 373 aaPredicted RBP10.46□□□□□ -0.73
VRK3-210ENST00000596121 TMPRSS11DO60235 418 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 SPAG7O75391 227 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 PDYNP01213 254 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 SERPINA7P05543 415 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 CHN1P15882 459 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 HIST1H1TP22492 207 aaPredicted RBP10.46□□□□□ -0.73
VRK3-210ENST00000596121 PTX3P26022 381 aaPredicted RBP10.46□□□□□ -0.73
VRK3-210ENST00000596121 SERPINB1P30740 379 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 SOX11P35716 441 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 SKP1P63208 163 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 KLRB1Q12918 225 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 GGTA1PQ4G0N0 100 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 PAPD4Q6PIY7 484 aaKnown RBP10.46□□□□□ -0.73
VRK3-210ENST00000596121 IGFL2Q6UWQ7 119 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 IGFL3Q6UXB1 125 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 QSOX2Q6ZRP7 698 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 ZNF605Q86T29 641 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 SIRT6Q8N6T7 355 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 NFAM1Q8NET5 270 aaPredicted RBP10.46□□□□□ -0.73
VRK3-210ENST00000596121 RGMAQ96B86 450 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms