RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 ZMYND15Q9H091 742 aa12.03□□□□□ -0.48
VMP1-202ENST00000585847 MYNNQ9NPC7 610 aa12.03□□□□□ -0.48
VMP1-202ENST00000585847 CCDC167Q9P0B6 97 aa12.03□□□□□ -0.48
VMP1-202ENST00000585847 POLR3HQ9Y535 204 aaPredicted RBP12.03□□□□□ -0.48
VMP1-202ENST00000585847 PCDHGA4Q9Y5G9 962 aa12.03□□□□□ -0.48
VMP1-202ENST00000585847 PTGDR2Q9Y5Y4 395 aa12.03□□□□□ -0.48
VMP1-202ENST00000585847 IGSF10Q6WRI0 2623 aa12.03□□□□□ -0.48
VMP1-202ENST00000585847 FER1L5A0AVI2 2057 aa12.02□□□□□ -0.48
VMP1-202ENST00000585847 CCDC187A0A096LP49 1063 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 ARHGAP10A1A4S6 786 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 EFCAB7A8K855 629 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 H7BY64 318 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 HAT1O14929 419 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 ANKRD28O15084 1053 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 LCMT2O60294 686 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 TBX19O60806 448 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 SCELO95171 688 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 G6PDP11413 515 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 NQO1P15559 274 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 ITIH1P19827 911 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 RAP1GDS1P52306 607 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 POLR2JP52435 117 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 DIO3P55073 304 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 DDX39BQ13838 428 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 RBBP5Q15291 538 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 DEFB110Q30KQ9 67 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 RNF44Q7L0R7 432 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 RAB11FIP2Q7L804 512 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 PLD3Q8IV08 490 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.02□□□□□ -0.49
VMP1-202ENST00000585847 LIX1Q8N485 282 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 CAMKVQ8NCB2 501 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 RBM15BQ8NDT2 890 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 NT5CQ8TCD5 201 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 PROKR1Q8TCW9 393 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 PRAP1Q96NZ9 151 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 KCNC2Q96PR1 638 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 ZFYVE21Q9BQ24 234 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 TBCDQ9BTW9 1192 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 CLMPQ9H6B4 373 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 CLK4Q9HAZ1 481 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 APMAPQ9HDC9 416 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 PRM3Q9NNZ6 103 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 ENAMQ9NRM1 1142 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 FARSBQ9NSD9 589 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 FAM120CQ9NX05 1096 aaKnown RBP12.02□□□□□ -0.49
VMP1-202ENST00000585847 TAS2R1Q9NYW7 299 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 SATB2Q9UPW6 733 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 RAXQ9Y2V3 346 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 LOXL2Q9Y4K0 774 aa12.02□□□□□ -0.49
VMP1-202ENST00000585847 LAMA5O15230 3695 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 TMX2-CTNND1H3BSU7 103 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 MRASO14807 208 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 NDUFS4O43181 175 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 OR1F1O43749 312 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 PCDH7O60245 1069 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 CIB2O75838 187 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 MSL3P1P0C860 447 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 SDC1P18827 310 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 NUDT2P50583 147 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 NEK2P51955 445 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 RPS13P62277 151 aaKnown RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 SNRPNP63162 240 aaKnown RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 HSD11B2P80365 405 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 MC2RQ01718 297 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 MEF2AQ02078 507 aaPredicted RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 HEPACAMQ14CZ8 416 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 GPR19Q15760 415 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 TRMT5Q32P41 509 aaKnown RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 SOWAHCQ53LP3 525 aaPredicted RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 ANXA8L1Q5VT79 327 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 TRIM40Q6P9F5 258 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 COMMD6Q7Z4G1 85 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 ZCCHC7Q8N3Z6 543 aaKnown RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 AGBL5Q8NDL9 886 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 ZNF740Q8NDX6 193 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 C7orf57Q8NEG2 295 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 OR8J2Q8NGG1 315 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 SLC13A3Q8WWT9 602 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 GAL3ST3Q96A11 431 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 RERGQ96A58 199 aaPredicted RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 ZNF501Q96CX3 271 aaPredicted RBP12.01□□□□□ -0.49
VMP1-202ENST00000585847 TCTN2Q96GX1 697 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 ZNF285Q96NJ3 590 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 C1orf50Q9BV19 199 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 MUC13Q9H3R2 512 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 SPAG4Q9NPE6 437 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 EHD3Q9NZN3 535 aa12.01□□□□□ -0.49
VMP1-202ENST00000585847 LOC105369274A0A096LPK9 316 aa12□□□□□ -0.49
VMP1-202ENST00000585847 LOC102723532A0A0G2JNH3 316 aa12□□□□□ -0.49
VMP1-202ENST00000585847 LOC100653049A0A140TA62 436 aa12□□□□□ -0.49
VMP1-202ENST00000585847 GNG14A0A1W2PPG7 69 aa12□□□□□ -0.49
VMP1-202ENST00000585847 FEZF1A0PJY2 475 aa12□□□□□ -0.49
VMP1-202ENST00000585847 B4E171 279 aa12□□□□□ -0.49
VMP1-202ENST00000585847 NR5A2O00482 541 aa12□□□□□ -0.49
VMP1-202ENST00000585847 GSC2O15499 205 aa12□□□□□ -0.49
VMP1-202ENST00000585847 SRPX2O60687 465 aaPredicted RBP12□□□□□ -0.49
VMP1-202ENST00000585847 ERN1O75460 977 aaKnown RBP12□□□□□ -0.49
VMP1-202ENST00000585847 KRT34O76011 436 aa12□□□□□ -0.49
VMP1-202ENST00000585847 TIAF1O95411 115 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms