RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF501Q96CX3 271 aaPredicted RBP23.8■■□□□ 1.4
SHMT1-207ENST00000580002 FGF21Q9NSA1 209 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 TOR4AQ9NXH8 423 aa23.8■■□□□ 1.4
SHMT1-207ENST00000580002 A0A0A6YYC8 382 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-207ENST00000580002 LOC105378220A0A1B0GUY1 285 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-207ENST00000580002 A0A1W2PR48 441 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 CCDC154A6NI56 674 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 GLOD5A6NK44 160 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 I3L1I5 382 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-207ENST00000580002 TOX3O15405 576 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-207ENST00000580002 FOXS1O43638 330 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 ANKRD34CP0C6C1 535 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 CPOXP36551 454 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 OR4F3Q6IEY1 312 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 PIP4P1Q86T03 277 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 KMT5CQ86Y97 462 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 SRFBP1Q8NEF9 429 aaKnown RBP23.79■■□□□ 1.4
SHMT1-207ENST00000580002 SLC25A23Q9BV35 468 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 TXLNGQ9NUQ3 528 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 TMEM184BQ9Y519 407 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-207ENST00000580002 ADAMTS20P59510 1910 aa23.79■■□□□ 1.4
SHMT1-207ENST00000580002 HYKKA2RU49 373 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 SCAMP2O15127 329 aaKnown RBP23.78■■□□□ 1.4
SHMT1-207ENST00000580002 COX7A2P14406 83 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 PRPS1L1P21108 318 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 MTTPP55157 894 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ZFP36L1Q07352 338 aaKnown RBP23.78■■□□□ 1.4
SHMT1-207ENST00000580002 MPEG1Q2M385 716 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 MANEAQ5SRI9 462 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ABHD13Q7L211 337 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ANKRD46Q86W74 232 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 RTKNQ9BST9 563 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 COPS7BQ9H9Q2 264 aaPredicted RBP23.78■■□□□ 1.4
SHMT1-207ENST00000580002 IL1RL2Q9HB29 575 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 KCMF1Q9P0J7 381 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ERVK-11Q9UQG0 969 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 A0A1W2PP18 115 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 MAP3K7O43318 606 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 GALR3O60755 368 aaPredicted RBP23.78■■□□□ 1.4
SHMT1-207ENST00000580002 OR2B3O76000 313 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 SCELO95171 688 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 PGRP06401 933 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 FURINP09958 794 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ASMTP46597 345 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ALDH9A1P49189 494 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 NUDT2P50583 147 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 WNT3P56703 355 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 IRX1P78414 480 aaPredicted RBP23.78■■□□□ 1.4
SHMT1-207ENST00000580002 SLC9A5Q14940 896 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ZCCHC7Q8N3Z6 543 aaKnown RBP23.78■■□□□ 1.4
SHMT1-207ENST00000580002 ZBTB18Q99592 522 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 TUBB6Q9BUF5 446 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 NLNQ9BYT8 704 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 REEP4Q9H6H4 257 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 SH3BP4Q9P0V3 963 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 NDUFAF1Q9Y375 327 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 SLC22A7Q9Y694 548 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 DMXL1Q9Y485 3027 aa23.78■■□□□ 1.4
SHMT1-207ENST00000580002 PCNX2A6NKB5 2137 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 URADA6NGE7 173 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 PGRMC2O15173 223 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 ITGAXP20702 1163 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 KLC1Q07866 573 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 MAPRE2Q15555 327 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 MUM1Q2TAK8 710 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 MMEL1Q495T6 779 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 TICAM1Q8IUC6 712 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 EFCAB3Q8N7B9 438 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 DEFB124Q8NES8 71 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 TESCQ96BS2 214 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 OR6C1Q96RD1 312 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 CSF3RQ99062 836 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 SLC39A3Q9BRY0 314 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 APMAPQ9HDC9 416 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 MRGBPQ9NV56 204 aa23.77■■□□□ 1.4
SHMT1-207ENST00000580002 COL27A1Q8IZC6 1860 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-207ENST00000580002 FITM1A5D6W6 292 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 PROB1E7EW31 1015 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 MRASO14807 208 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 RDH16O75452 317 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 TIAF1O95411 115 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 MXRA7P84157 204 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 FOXM1Q08050 763 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 TGM3Q08188 693 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 TMTC4Q5T4D3 741 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 NDUFAF5Q5TEU4 345 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 ASRGL1Q7L266 308 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 GLB1L3Q8NCI6 653 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-207ENST00000580002 CIDECQ96AQ7 238 aaPredicted RBP23.76■■□□□ 1.39
SHMT1-207ENST00000580002 OR52E6Q96RD3 313 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 DPYSL5Q9BPU6 564 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 TRIM8Q9BZR9 551 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 DHCR7Q9UBM7 475 aaKnown RBP23.76■■□□□ 1.39
SHMT1-207ENST00000580002 ATP6V1HQ9UI12 483 aa23.76■■□□□ 1.39
SHMT1-207ENST00000580002 A0A1W2PS29 197 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 FAM227AF5H4B4 570 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 SCN2BO60939 215 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 S100A3P33764 101 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 ARFIP1P53367 373 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 CLNS1AP54105 237 aaKnown RBP23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms