RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 BTBD16Q32M84 506 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 C4orf17Q53FE4 359 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 SFT2D3Q587I9 215 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 C10orf62Q5T681 223 aaPredicted RBP12.6□□□□□ -0.39
CLK3-216ENST00000564468 SLC6A19Q695T7 634 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 PLAG1Q6DJT9 500 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 LANCL3Q6ZV70 420 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 VN1R5Q7Z5H4 357 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 IQCKQ8N0W5 287 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 L3MBTL4Q8NA19 623 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 M1APQ8TC57 530 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 QRFPRQ96P65 431 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 F2RL3Q96RI0 385 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 WDR77Q9BQA1 342 aaPredicted RBP12.6□□□□□ -0.39
CLK3-216ENST00000564468 MESP1Q9BRJ9 268 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 MFRPQ9BY79 579 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 AICDAQ9GZX7 198 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 ILKAPQ9H0C8 392 aaPredicted RBP12.6□□□□□ -0.39
CLK3-216ENST00000564468 EPB41L4BQ9H329 900 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 PSD3Q9NYI0 1048 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 DCDC2Q9UHG0 476 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 SHANK1Q9Y566 2161 aa12.6□□□□□ -0.39
CLK3-216ENST00000564468 A0A0G2JN53 185 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 DYTNA2CJ06 578 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 BLACEA4D250 179 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 C4orf51C9J302 202 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 SEC24DO94855 1032 aaPredicted RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 SORBS2O94875 1100 aaKnown RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 SIX3O95343 332 aaPredicted RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 TGFB1P01137 390 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 MYBL2P10244 700 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 PTX3P26022 381 aaPredicted RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 EFNA3P52797 238 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 HSD17B7P56937 341 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 RUNX2Q13950 521 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 DEPDC1Q5TB30 811 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 KHDRBS2Q5VWX1 349 aaKnown RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 PAPD4Q6PIY7 484 aaKnown RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 Q6ZS92 163 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 ATCAYQ86WG3 371 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 TDRPQ86YL5 185 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 ZNF595Q8IYB9 648 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 FAM26EQ8N5C1 309 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 BRIX1Q8TDN6 353 aaKnown RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 RGMAQ96B86 450 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 NTMT1Q9BV86 223 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 NOL11Q9H8H0 719 aaKnown RBP12.59□□□□□ -0.39
CLK3-216ENST00000564468 ANKZF1Q9H8Y5 726 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 LYRM4Q9HD34 91 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 PRDM7Q9NQW5 492 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 PTGFRNQ9P2B2 879 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 TBK1Q9UHD2 729 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 CROCCQ5TZA2 2017 aa12.59□□□□□ -0.39
CLK3-216ENST00000564468 SVILO95425 2214 aa12.58□□□□□ -0.39
CLK3-216ENST00000564468 IGHV3-20A0A0C4DH32 117 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 OR2W5A6NFC9 320 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 LRRC14BA6NHZ5 514 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 ESPNB1AK53 854 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 DNAJB6O75190 326 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 TBX6O95947 436 aaPredicted RBP12.58□□□□□ -0.4
CLK3-216ENST00000564468 KRT15P19012 456 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 SOX11P35716 441 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 SSR2P43308 183 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 RAP1GDS1P52306 607 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 MLLT10P55197 1068 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 LIM2P55344 173 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 TAS2R50P59544 299 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 FOXK1P85037 733 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 DDX39BQ13838 428 aaKnown RBP12.58□□□□□ -0.4
CLK3-216ENST00000564468 RASA2Q15283 850 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 TLR1Q15399 786 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 CPSF6Q16630 551 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLK3-216ENST00000564468 PLEKHN1Q494U1 663 aaPredicted RBP12.58□□□□□ -0.4
CLK3-216ENST00000564468 ABHD17BQ5VST6 288 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 ADNP2Q6IQ32 1131 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 LINC00696Q6ZRV3 163 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 SLC22A9Q8IVM8 553 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 CYP4X1Q8N118 509 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 HUS1BQ8NHY5 278 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 DNAJB14Q8TBM8 379 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 CPT1CQ8TCG5 803 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 TSLPQ969D9 159 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 ZNF354BQ96LW1 612 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 C1QTNF3Q9BXJ4 246 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 KCNK13Q9HB14 408 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 MMP25Q9NPA2 562 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 PRTFDC1Q9NRG1 225 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 MS4A12Q9NXJ0 267 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 ABI3Q9P2A4 366 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 UNC79Q9P2D8 2635 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 PCTPQ9UKL6 214 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 PPT2Q9UMR5 302 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 DAPP1Q9UN19 280 aa12.58□□□□□ -0.4
CLK3-216ENST00000564468 PRRC2CQ9Y520 2896 aaKnown RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 TCRBV16S1A1N1A0A5B0 115 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 A8MT66 165 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 FAM227AF5H4B4 570 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 FOXE1O00358 373 aaPredicted RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 CDK2AP1O14519 115 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 CDH16O75309 829 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms