RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 NCF1CA8MVU1 366 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 OR2J2O76002 312 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 SMIM10L1P0DMW3 83 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 C1GALT1C1LP0DN25 315 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 NCF1P14598 390 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 ZNF37AP17032 561 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 HNMTP50135 292 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 PLA2G16P53816 162 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 HSD17B7P56937 341 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 RAB38P57729 211 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 PPIAP62937 165 aaKnown RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 RUNX2Q13950 521 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 SLBPQ14493 270 aaKnown RBP eCLIP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 ZNF460Q14592 562 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 PPP1R3AQ16821 1122 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 TRMT10BQ6PF06 316 aaKnown RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 IL20RBQ6UXL0 311 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 TMIGD1Q6UXZ0 262 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 C16orf47Q6ZP98 133 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 TMEM200AQ86VY9 491 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 KLHDC8AQ8IYD2 350 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 KRT78Q8N1N4 520 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 ARMC10Q8N2F6 343 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 ZFP62Q8NB50 900 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 PSD4Q8NDX1 1056 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 OR5M3Q8NGP4 307 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 C16orf52Q8NHV5 167 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 PDLIM5Q96HC4 596 aaKnown RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 SMIM10Q96HG1 83 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 NPLQ9BXD5 320 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 UCK2Q9BZX2 261 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 AICDAQ9GZX7 198 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 COPS7BQ9H9Q2 264 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 LIN28AQ9H9Z2 209 aaKnown RBP12.09□□□□□ -0.47
SF3B3-202ENST00000562722 ADAP2Q9NPF8 381 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 KCNJ16Q9NPI9 418 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 CTNNAL1Q9UBT7 734 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 OARD1Q9Y530 152 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 CLCA3PQ9Y6N3 262 aa12.09□□□□□ -0.47
SF3B3-202ENST00000562722 POLQO75417 2590 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 CCDC168Q8NDH2 2452 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 FAM95CA0A1B0GW59 222 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 ANKDD1BA6NHY2 528 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 FOXO6A8MYZ6 492 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 NPIPA2E9PIF3 369 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 NPIPA3F8WFD2 350 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 G3V3Y1 287 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 WWP2O00308 870 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 PRKNO60260 465 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 HNRNPH1P31943 449 aaKnown RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 HPDP32754 393 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 GDF5P43026 501 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 HNRNPFP52597 415 aaKnown RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 SLC12A2P55011 1212 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 PMPCAQ10713 525 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 STX4Q12846 297 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 TSNQ15631 228 aaKnown RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 C18orf21Q32NC0 220 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 TRIM40Q6P9F5 258 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 ACAD11Q709F0 780 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 ADAMTSL2Q86TH1 951 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 CCDC71Q8IV32 467 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 ANKMY2Q8IV38 441 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 SCUBE1Q8IWY4 988 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 GPALPP1Q8IXQ4 340 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 ZNF595Q8IYB9 648 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 SLC35F6Q8N357 371 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 TMEM132CQ8N3T6 1108 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 OR10Q1Q8NGQ4 319 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 MS4A6EQ96DS6 147 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 PWWP2AQ96N64 755 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 PLAC1Q9HBJ0 212 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 ZNF223Q9UK11 482 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-202ENST00000562722 HRH3Q9Y5N1 445 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 CACNA1CQ13936 2221 aa12.08□□□□□ -0.48
SF3B3-202ENST00000562722 MYOCOSA0A1B0GUC4 107 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 LRIT2A6NDA9 550 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 TGFBR3LH3BV60 316 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 CLGNO14967 610 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 OR6B1O95007 311 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 TNNI3P19429 210 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 CERS1P27544 350 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 SOX3P41225 446 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 ARL4CP56559 192 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 CDKL1Q00532 357 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 MGAT5Q09328 741 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 RCN2Q14257 317 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 MORF4L2Q15014 288 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 ELAVL1Q15717 326 aaKnown RBP12.07□□□□□ -0.48
SF3B3-202ENST00000562722 HSDL2Q6YN16 418 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 SLCO4C1Q6ZQN7 724 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 SLC22A16Q86VW1 577 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 RPRMLQ8N4K4 120 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 SNX31Q8N9S9 440 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 ACBD4Q8NC06 268 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 TMEM52Q8NDY8 209 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 OR2M7Q8NG81 312 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 OR5M9Q8NGP3 310 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 LILRB4Q8NHJ6 448 aa12.07□□□□□ -0.48
SF3B3-202ENST00000562722 VPS39Q96JC1 886 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms