RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LAMP1P11279 417 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ZNF23P17027 643 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ZNF26P17031 533 aaPredicted RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 TACR1P25103 407 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 PTPN6P29350 595 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 KDELR2P33947 212 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 FASLGP48023 281 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 KHKP50053 298 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 EMP3P54852 163 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 MANFP55145 182 aaKnown RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 WNT3P56703 355 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 CSNK2BP67870 215 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 KCNC4Q03721 635 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 TOP3AQ13472 1001 aaPredicted RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 CLCA4Q14CN2 919 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ZIC1Q15915 447 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 NDUFA9Q16795 377 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ZSWIM7Q19AV6 140 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ALG11Q2TAA5 492 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 SPDYE7PQ495Y7 208 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 KCTD21Q4G0X4 260 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 GARNL3Q5VVW2 1013 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 OR52E8Q6IFG1 317 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 PTCRAQ6ISU1 281 aaPredicted RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 CBLL1Q75N03 491 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ASPGQ86U10 573 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 FAM124AQ86V42 546 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 CYP4Z1Q86W10 505 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ARMC8Q8IUR7 673 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ALDH16A1Q8IZ83 802 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 CLEC4FQ8N1N0 589 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 DHRSXQ8N5I4 330 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 LINC01555Q8NAE3 123 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 FAM156AQ8NDB6 213 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ZNF555Q8NEP9 628 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 OR7A2PQ8NGA2 310 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 OR6C4Q8NGE1 309 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 CLHC1Q8NHS4 586 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 NAT14Q8WUY8 206 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 OIT3Q8WWZ8 545 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 GEMIN6Q8WXD5 167 aaKnown RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 LRTOMTQ8WZ04 291 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 NEURL3Q96EH8 262 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 PDXPQ96GD0 296 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 BMFQ96LC9 184 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 PRAP1Q96NZ9 151 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 ZFYVE21Q9BQ24 234 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 DPH7Q9BTV6 452 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 BTBD2Q9BX70 525 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 SLC6A16Q9GZN6 736 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 RAB33BQ9H082 229 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 GABARAPL1Q9H0R8 117 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 OR51B5Q9H339 312 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 REEP1Q9H902 201 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 LMAN1LQ9HAT1 526 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 A4GALTQ9NPC4 353 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 EVA1BQ9NVM1 165 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 CPNE7Q9UBL6 633 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 TBC1D29Q9UFV1 150 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 SUSD2Q9UGT4 822 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 APOBEC3BQ9UH17 382 aaKnown RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 NDRG2Q9UN36 371 aaKnown RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 DOLKQ9UPQ8 538 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 LIPT1Q9Y234 373 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 MRPS33Q9Y291 106 aaKnown RBP7.17□□□□□ -1.26
VPS39-204ENST00000561818 PRKAB1Q9Y478 270 aa7.17□□□□□ -1.26
VPS39-204ENST00000561818 METTL12A8MUP2 240 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 C9JVG2 144 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 B3GALT2O43825 422 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 TIPRLO75663 272 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 LRATO95237 230 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 KCNK5O95279 499 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 SERPINA1P01009 418 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CSF2P04141 144 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 IGHV4-34P06331 123 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 LYNP07948 512 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 FHP07954 510 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 IL3P08700 152 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 FOSL2P15408 326 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 NME1P15531 152 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 CSNK2A2P19784 350 aaPredicted RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 FPR1P21462 350 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CD38P28907 300 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 TPP2P29144 1249 aaPredicted RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 DNAJA1P31689 397 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 BSGP35613 385 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CAPGP40121 348 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CRATP43155 626 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 GZMMP51124 257 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ARSFP54793 590 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 OR4D2P58180 307 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 DSTNP60981 165 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ESRRGP62508 458 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 UBE2IP63279 158 aaKnown RBP7.16□□□□□ -1.26
VPS39-204ENST00000561818 MERTKQ12866 999 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 DAG1Q14118 895 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 SPIDRQ14159 915 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 LRRC36Q1X8D7 754 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 CRB2Q5IJ48 1285 aa7.16□□□□□ -1.26
VPS39-204ENST00000561818 ATAD3BQ5T9A4 648 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms