RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 LIM2P55344 173 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 RAB38P57729 211 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 MLF1P58340 268 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 ATP6V0D1P61421 351 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 STXBP1P61764 594 aaKnown RBP16.57■□□□□ 0.24
HDDC3-205ENST00000559898 AP2B1P63010 937 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 HSF1Q00613 529 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 OC90Q02509 493 aaPredicted RBP16.57■□□□□ 0.24
HDDC3-205ENST00000559898 ZRSR2Q15696 482 aaKnown RBP16.57■□□□□ 0.24
HDDC3-205ENST00000559898 INAQ16352 499 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 PDK4Q16654 411 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 ABHD17CQ6PCB6 329 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 RAPH1Q70E73 1250 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.57■□□□□ 0.24
HDDC3-205ENST00000559898 ZNF321PQ8N8H1 164 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 OR2L5Q8NG80 312 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 SUN3Q8TAQ9 357 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 WDR34Q96EX3 536 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 PTCD3Q96EY7 689 aaKnown RBP16.57■□□□□ 0.24
HDDC3-205ENST00000559898 CD244Q9BZW8 370 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 REXO4Q9GZR2 422 aaKnown RBP16.57■□□□□ 0.24
HDDC3-205ENST00000559898 RAB17Q9H0T7 212 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 PRTFDC1Q9NRG1 225 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 GPRC5BQ9NZH0 403 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 SEC14L3Q9UDX4 400 aa16.57■□□□□ 0.24
HDDC3-205ENST00000559898 TMEM200CA6NKL6 621 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 SUPT3HB4E1H0 165 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 PSMD12O00232 456 aaPredicted RBP16.56■□□□□ 0.24
HDDC3-205ENST00000559898 SAP18O00422 153 aaKnown RBP16.56■□□□□ 0.24
HDDC3-205ENST00000559898 SUPT3HO75486 399 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 GPR143P51810 404 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 ID2Q02363 134 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 MROH9Q5TGP6 573 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 KRT78Q8N1N4 520 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 TCAIMQ8N3R3 496 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 CPSF7Q8N684 471 aaKnown RBP16.56■□□□□ 0.24
HDDC3-205ENST00000559898 FAR2Q96K12 515 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 C16orf45Q96MC5 204 aaPredicted RBP16.56■□□□□ 0.24
HDDC3-205ENST00000559898 FRMD6Q96NE9 622 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 MAPKAP1Q9BPZ7 522 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 NINJ2Q9NZG7 142 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 KCMF1Q9P0J7 381 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 LRFN1Q9P244 771 aa16.56■□□□□ 0.24
HDDC3-205ENST00000559898 ITPR2Q14571 2701 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 TRGV8A0A0C4DH27 118 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 TRBV11-1A0A0K0K1C0 115 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 ANKDD1BA6NHY2 528 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 SP1P08047 785 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 GRNP28799 593 aaKnown RBP16.55■□□□□ 0.24
HDDC3-205ENST00000559898 RFC3P40938 356 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 MSH2P43246 934 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 SKP1P63208 163 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 CAV1Q03135 178 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 CDSNQ15517 529 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 SIAH3Q8IW03 269 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 CHERPQ8IWX8 916 aaKnown RBP16.55■□□□□ 0.24
HDDC3-205ENST00000559898 PLD6Q8N2A8 252 aaKnown RBP16.55■□□□□ 0.24
HDDC3-205ENST00000559898 SLC5A8Q8N695 610 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 NOA1Q8NC60 698 aaKnown RBP16.55■□□□□ 0.24
HDDC3-205ENST00000559898 DNAJB8Q8NHS0 232 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 ZNF473Q8WTR7 871 aaKnown RBP16.55■□□□□ 0.24
HDDC3-205ENST00000559898 NCLNQ969V3 563 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 RELTQ969Z4 430 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 MS4A8Q9BY19 250 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 PHACTR1Q9C0D0 580 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 EHD1Q9H4M9 534 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 ZNF358Q9NW07 568 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 NUDT4Q9NZJ9 180 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 DMGDHQ9UI17 866 aaKnown RBP16.55■□□□□ 0.24
HDDC3-205ENST00000559898 DAPP1Q9UN19 280 aa16.55■□□□□ 0.24
HDDC3-205ENST00000559898 ASPDHA6ND91 283 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 NPIPA5E9PKD4 350 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 B3GALT2O43825 422 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 KERAO60938 352 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 LDB3O75112 727 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 PRKRAO75569 313 aaKnown RBP16.54■□□□□ 0.24
HDDC3-205ENST00000559898 TGFB1P01137 390 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 CRYABP02511 175 aaKnown RBP16.54■□□□□ 0.24
HDDC3-205ENST00000559898 C2P06681 752 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 LTA4HP09960 611 aaKnown RBP16.54■□□□□ 0.24
HDDC3-205ENST00000559898 PCNAP12004 261 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 STX2P32856 288 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 TAS2R50P59544 299 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 IRF8Q02556 426 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 E2F2Q14209 437 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 C3AR1Q16581 482 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 MAPKAPK3Q16644 382 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 CDKL4Q5MAI5 379 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 SLC25A25Q6KCM7 469 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 NIPAL1Q6NVV3 410 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 C8orf74Q6P047 294 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 FGD2Q7Z6J4 655 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 TTLQ8NG68 377 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 DOK4Q8TEW6 326 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 CCDC120Q96HB5 630 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 GPR78Q96P69 363 aa16.54■□□□□ 0.24
HDDC3-205ENST00000559898 NPLQ9BXD5 320 aaPredicted RBP16.54■□□□□ 0.24
HDDC3-205ENST00000559898 CNOT10Q9H9A5 744 aaKnown RBP16.54■□□□□ 0.24
HDDC3-205ENST00000559898 CLK4Q9HAZ1 481 aaKnown RBP16.54■□□□□ 0.24
HDDC3-205ENST00000559898 SNX15Q9NRS6 342 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms