RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 C7orf57Q8NEG2 295 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 MYRIPQ8NFW9 859 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 OR5M3Q8NGP4 307 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 OR10Q1Q8NGQ4 319 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 CREB3L4Q8TEY5 395 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 CCT6BQ92526 530 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 DAZLQ92904 295 aaKnown RBP8.54□□□□□ -1.04
HDDC3-204ENST00000559834 NCLNQ969V3 563 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 GAL3ST3Q96A11 431 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 EGFL8Q99944 293 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 PITHD1Q9GZP4 211 aaPredicted RBP8.54□□□□□ -1.04
HDDC3-204ENST00000559834 SPNS1Q9H2V7 528 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 ADAP2Q9NPF8 381 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 PLSCR2Q9NRY7 297 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 KCNN3Q9UGI6 736 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 ASIC3Q9UHC3 531 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 RNF6Q9Y252 685 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 HRH3Q9Y5N1 445 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 CLCA3PQ9Y6N3 262 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 NKX2-6A6NCS4 301 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 OR14I1A6ND48 311 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 LRIT2A6NDA9 550 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 ANKDD1BA6NHY2 528 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 FIGNL2A6NMB9 653 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 FAM90A27PA6NNH2 459 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 NPIPA2E9PIF3 369 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 NPIPA3F8WFD2 350 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 DNALI1O14645 258 aaPredicted RBP8.53□□□□□ -1.04
HDDC3-204ENST00000559834 ERI3O43414 337 aaKnown RBP8.53□□□□□ -1.04
HDDC3-204ENST00000559834 CTNSO60931 367 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 CLEC3AO75596 197 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 OR2J2O76002 312 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 TOXO94900 526 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 IFNA16P05015 189 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 HOXD4P09016 255 aaPredicted RBP8.53□□□□□ -1.04
HDDC3-204ENST00000559834 TNNI3P19429 210 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 CNR1P21554 472 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 MSX1P28360 303 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 GPR143P51810 404 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 RAB38P57729 211 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 TGM3Q08188 693 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 ILF2Q12905 390 aaKnown RBP8.53□□□□□ -1.04
HDDC3-204ENST00000559834 NDUFAF5Q5TEU4 345 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 TRIM40Q6P9F5 258 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 SBSNQ6UWP8 590 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 IL20RBQ6UXL0 311 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 TMIGD1Q6UXZ0 262 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 HSDL2Q6YN16 418 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 GK5Q6ZS86 529 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 DMRTC2Q8IXT2 367 aaPredicted RBP8.53□□□□□ -1.04
HDDC3-204ENST00000559834 KLHDC8AQ8IYD2 350 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 MARVELD2Q8N4S9 558 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 OR5L2Q8NGL0 311 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 ACTRT1Q8TDG2 376 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 KIAA1191Q96A73 305 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 LRRC39Q96DD0 335 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 VPS39Q96JC1 886 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 FAM173AQ9BQD7 235 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 UCK2Q9BZX2 261 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 NT5DC2Q9H857 520 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 MYOTQ9UBF9 498 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 TNFRSF10DQ9UBN6 386 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 CTNNAL1Q9UBT7 734 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 EDARQ9UNE0 448 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 PPP2R2CQ9Y2T4 447 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 OARD1Q9Y530 152 aa8.53□□□□□ -1.04
HDDC3-204ENST00000559834 CTAGE15A4D2H0 777 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 FAM47E-STBD1D6RA91 191 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 WWP2O00308 870 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 CDC7O00311 574 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 WDR47O94967 919 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ZWINTO95229 277 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF37AP17032 561 aaPredicted RBP8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ACVR2AP27037 513 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ELK3P41970 407 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ZFP36L2P47974 494 aaKnown RBP8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ART1P52961 327 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 MTTPP55157 894 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 NUP107P57740 925 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 CCZ1BP86790 482 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 CCZ1P86791 482 aaPredicted RBP8.52□□□□□ -1.05
HDDC3-204ENST00000559834 STX4Q12846 297 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 MYBPHQ13203 477 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 SERTAD2Q14140 314 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 SLC10A1Q14973 349 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ELAVL1Q15717 326 aaKnown RBP8.52□□□□□ -1.05
HDDC3-204ENST00000559834 PPP1R3AQ16821 1122 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 MSS51Q4VC12 460 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 XKR6Q5GH73 641 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ZNF585AQ6P3V2 769 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 OPN5Q6U736 354 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 SLCO4C1Q6ZQN7 724 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 RTL4Q6ZR62 310 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 FRA10AC1Q70Z53 315 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 ADAMTSL2Q86TH1 951 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 CTAGE6Q86UF2 777 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 TMEM200AQ86VY9 491 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 CCDC71Q8IV32 467 aaPredicted RBP8.52□□□□□ -1.05
HDDC3-204ENST00000559834 IGDCC3Q8IVU1 814 aa8.52□□□□□ -1.05
HDDC3-204ENST00000559834 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms